[Home] | [Total List]

[181245_at]

Description C17F4.1 /REP_DB=WormBase Gene ID /WP=CE08274 /TR=O16543 /GB=AAK31434.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(-3)
A 		3.9
(-1.7)
A 		4.2
(-1.3)
A 		8.1
(3)
A 		5
B 4
(-2)
A 		6
(3)
A 		3.6
(-3)
A 		4.5
(-0.8)
A 		2
C 4.6
(-2.7)
A 		13.2
(3)
A 		4.1
(-3)
A 		9.3
(0.4)
A 		9
avr 3.8
(-3) 		7.7
(3) 		4
(-2.7) 		7.3
(2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5
(0.6)
A 		5.5
(1.4)
A 		4.9
(0.4)
A 		2.8
(-3)
A 		6.5
(3)
A 		5.6
(1.5)
A 		4
B 3.8
(-1)
A 		4.5
(0.1)
A 		3.6
(-1.2)
A 		3.6
(-1.2)
A 		6.5
(3)
A 		2.4
(-3)
A 		4
C 3.8
(-2.9)
A 		4.7
(-1.5)
A 		3.7
(-3)
A 		4.5
(-1.8)
A 		7.7
(3)
A 		3.7
(-3)
A 		4
avr 4.2
(-1.9) 		4.9
(-0.6) 		4.1
(-2.1) 		3.6
(-3) 		6.9
(3) 		3.9
(-2.5) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(0)
A 		0.8
(-3)
A 		1.1
(1.5)
A 		1.2
(3)
A 		0
B 1.3
(1.3)
A 		1.5
(3)
A 		0.8
(-3)
A 		1
(-1.3)
A 		1
C 1.5
(-2.8)
A 		3.8
(3)
A 		1.4
(-3)
A 		1.6
(-2.5)
A 		2
avr 1.3
(-1.7) 		2
(3) 		1.1
(-3) 		1.3
(-1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.9
(-2.1)
A 		2
(3)
A 		1.1
(-1.2)
A 		0.7
(-3)
A 		2
(3)
A 		1.4
(0.2)
A 		1
B 1.3
(-1.6)
A 		1.5
(-0.9)
A 		0.9
(-3)
A 		1
(-2.6)
A 		2.6
(3)
A 		0.9
(-3)
A 		2
C 1.4
(-1.1)
A 		1.4
(-1.1)
A 		0.9
(-3)
A 		0.9
(-3)
A 		2.5
(3)
A 		1.2
(-1.9)
A 		2
avr 1.2
(-1.8) 		1.6
(-0.2) 		1
(-2.6) 		0.9
(-3) 		2.4
(3) 		1.2
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5875
Sequence Type Exemplar sequence
Representative Public ID C17F4.1 NCBI
Target Description C17F4.1 /REP_DB=WormBase Gene ID /WP=CE08274 /TR=O16543 /GB=AAK31434.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062089 NCBI Caenorhabditis elegans C17F4.1 (C17F4.1) mRNA, complete cds. 11/11 None
SNAP00000021559 ENSEMBL cdna:SNAP chromosome:CEL140:II:3249719:3250832:1 10/11 None
GENEFINDER00000021577 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3249719:3250975:1 10/11 None
C17F4.1 ENSEMBL cdna:known chromosome:CEL140:II:3250309:3250852:1 gene:C17F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3250307-3250851(+) 99.8 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F4.1
Entrez Gene 182737 Entrez gene
SwissProt O16543 EMBL-EBI
WormBase CE08274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31434 Hypothetical protein C17F4.1 [Caenorhabditis elegans] ref|NP_494490.1| C17F4.1 [Caenorhabditis elegans] 7.0E-93
blast AAK31434 Hypothetical protein C17F4.1 [Caenorhabditis elegans] ref|NP_494490.1| C17F4.1 [Caenorhabditis elegans] 2.0E-62
blast AAK31434 Hypothetical protein C17F4.1 [Caenorhabditis elegans] ref|NP_494490.1| C17F4.1 [Caenorhabditis elegans] 1.0E-58
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 2.0E-37
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 1.0E-36
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 1.0E-32
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 1.0E-31
blast CAB04834 Hypothetical protein T26E3.1 [Caenorhabditis elegans] ref|NP_493210.1| T26E3.1 [Caenorhabditis elegans] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:181245_AT
tggaagcggttcaatcgtccggcaggcggatggtgcatgcgatcgtttggcggtattttg
agccgagactccgcggaagctcagtgtcaaaccctgggagcaaccttgtccggttttcag
agttttgccgaggctcaatgggtttccacatctgccgtctctgtgatcaagcgtcccagt
ggttatctctggatcggagcacgtcccagtggttatctctggatcggagcacggtcacca
ctgccttcgtctggactgatgccttcacgacgggaaccgccggtttcaactgggacaata
agcaacctgacaacaaggatcttaatcaaccatgcgccattgtcctggccgcccacgcac
caatccacttccagagctatcagttccagccggcgatgatggatgatgccgagtgtgcgg
ctgattcggttgcgtctatgggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGCGGTTCAATCGTCCGGCAG 295 545 14 Antisense
GTGCATGCGATCGTTTGGCGGTATT 91 481 46 Antisense
TTTTGAGCCGAGACTCCGCGGAAGC 694 677 69 Antisense
GAAGCTCAGTGTCAAACCCTGGGAG 171 343 89 Antisense
AGGCTCAATGGGTTTCCACATCTGC 48 55 144 Antisense
TCAAGCGTCCCAGTGGTTATCTCTG 611 631 180 Antisense
AGCACGTCCCAGTGGTTATCTCTGG 287 75 211 Antisense
TTCGTCTGGACTGATGCCTTCACGA 488 693 259 Antisense
AGGATCTTAATCAACCATGCGCCAT 151 57 329 Antisense
ATCCACTTCCAGAGCTATCAGTTCC 174 41 376 Antisense
GCTGATTCGGTTGCGTCTATGGGAC 493 295 433 Antisense
Sequence Source Affymetrix Proprietary Database