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[181244_at] 7TM chemoreceptor, sra family

Description F18C5.1 /REP_DB=WormBase Gene ID /WP=CE02650 /TR=Q19549 /GB=AAA68409.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 37      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 26.9
(3)
A 		22
(1.8)
A 		2.8
(-3)
A 		6.9
(-2)
A 		24
B 15.9
(-1.1)
A 		35.7
(3)
A 		6.7
(-3)
A 		6.6
(-3)
A 		29
C 28.2
(1.5)
A 		8.4
(-1.9)
A 		2.3
(-3)
A 		36.6
(3)
A 		34
avr 23.7
(3) 		22
(2.5) 		3.9
(-3) 		16.7
(0.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 8.4
(-2.1)
A 		39.9
(2.4)
A 		37.6
(2.1)
A 		2.6
(-3)
A 		44.1
(3)
A 		2.4
(-3)
A 		42
B 19.1
(-0.6)
A 		7.3
(-2.2)
A 		45.2
(3)
A 		8.9
(-2)
A 		11
(-1.7)
A 		1.6
(-3)
A 		44
C 2.7
(-2.9)
A 		52.8
(3)
A 		3.9
(-2.7)
A 		34.1
(0.8)
A 		4
(-2.7)
A 		1.7
(-3)
A 		51
avr 10.1
(-1.4) 		33.3
(3) 		28.9
(2.2) 		15.2
(-0.5) 		19.7
(0.4) 		1.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.8
(3)
A 		4.8
(-0.3)
A 		0.7
(-3)
A 		1
(-2.8)
A 		9
B 5.1
(-0)
A 		8.8
(3)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		7
C 9.3
(3)
A 		2.4
(-1.9)
A 		0.8
(-3)
A 		6.2
(0.8)
A 		9
avr 8.1
(3) 		5.3
(0.6) 		1
(-3) 		2.9
(-1.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.6
(-2.6)
A 		14.2
(3)
A 		8.2
(0.4)
A 		0.7
(-3)
A 		13.3
(2.6)
A 		0.6
(-3)
A 		14
B 6.6
(0.5)
A 		2.4
(-2)
A 		11
(3)
A 		2.3
(-2)
A 		4.5
(-0.8)
A 		0.6
(-3)
A 		10
C 1
(-2.8)
A 		16.1
(3)
A 		1
(-2.8)
A 		6.9
(-0.6)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		16
avr 3.1
(-1.5) 		10.9
(3) 		6.7
(0.6) 		3.3
(-1.4) 		6.4
(0.4) 		0.6
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4810
Sequence Type Exemplar sequence
Representative Public ID F18C5.1 NCBI
Target Description F18C5.1 /REP_DB=WormBase Gene ID /WP=CE02650 /TR=Q19549 /GB=AAA68409.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062927 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-27) (sra-27) mRNA, complete cds. 11/11 None
GENEFINDER00000016669 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6568959:6570379:1 11/11 None
F18C5.1 ENSEMBL cdna:known chromosome:CEL140:II:6568959:6570379:1 gene:F18C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6568955-6570376(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-27
Ensembl F18C5.1
Entrez Gene 184633 Entrez gene
SwissProt Q19549 EMBL-EBI
WormBase CE33523 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68409 Serpentine receptor, class a (alpha) protein 27 [Caenorhabditis elegans] ref|NP_495328.2| Serpentine Receptor, class A (alpha) family member (sra-27) [Caenorhabditis elegans] sp|Q19549|SRA27_CAEEL Serpentine receptor class alpha-27 (Protein sra-27) 0.0
blast AAA68409 Serpentine receptor, class a (alpha) protein 27 [Caenorhabditis elegans] ref|NP_495328.2| Serpentine Receptor, class A (alpha) family member (sra-27) [Caenorhabditis elegans] sp|Q19549|SRA27_CAEEL Serpentine receptor class alpha-27 (Protein sra-27) 1.0E-176
blast CAA22070 Hypothetical protein Y40H7A.6 [Caenorhabditis elegans] ref|NP_502833.2| Serpentine Receptor, class A (alpha) family member (sra-30) [Caenorhabditis elegans] 4.0E-84
blast CAA22070 Hypothetical protein Y40H7A.6 [Caenorhabditis elegans] ref|NP_502833.2| Serpentine Receptor, class A (alpha) family member (sra-30) [Caenorhabditis elegans] 9.0E-81
blast CAE68115 Hypothetical protein CBG13758 [Caenorhabditis briggsae] 2.0E-64
blast CAE68115 Hypothetical protein CBG13758 [Caenorhabditis briggsae] 6.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495328.2 6 33-50,119-141,154-176,202-224,251-273,286-308
F18C5.1 6 33-50,119-141,154-176,202-224,251-273,286-308
GENEFINDER00000016669 4 139-158,186-208,235-257,270-292
Sequence
Target Sequence 
>C. ELEGANS:181244_AT
gcctatatgcttatcacggtttcgataattgttactgtgatcgttcatatacgtacatat
ggtggagtatctcgtgctggatatgttccatcttgtacatatcctccacaattatctcta
aatacttatcaagttgtgaataatgcaattttctggataataatggcaaattgtgttttg
acaattgctgttcttctactaaatatttataaagacaaaaggttgatcattttttatttt
gaaaaattgtttgaaaataatcaattcagaatcaaaaaatcagttttcgacactaaaaca
cgctacaactcttttgaaaacgtgctgacgacaaaagcaatatgcagtgttacctcaact
caatttgtttttttgagcttttcaacagcggcacttgcaattattcgtactctggaagcc
ggaatgtcagaagaagtatttcatattaatattcaatatatcaatggaggagtatatgga
aatctatcaattcctgttctgatttatttaaaaaccaaccaatgtattttacaacggagg
aagtcaattgataaaatgacaaatcatactggaaccgtggattcccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTATATGCTTATCACGGTTTCGA 599 281 475 Antisense
TATGGTGGAGTATCTCGTGCTGGAT 177 655 532 Antisense
ATGTTCCATCTTGTACATATCCTCC 55 47 557 Antisense
CATATCCTCCACAATTATCTCTAAA 172 215 572 Antisense
GACAATTGCTGTTCTTCTACTAAAT 200 365 654 Antisense
GACACTAAAACACGCTACAACTCTT 156 367 763 Antisense
ATATGCAGTGTTACCTCAACTCAAT 437 21 814 Antisense
TGAGCTTTTCAACAGCGGCACTTGC 612 569 848 Antisense
TCGTACTCTGGAAGCCGGAATGTCA 691 601 879 Antisense
GAAATCTATCAATTCCTGTTCTGAT 311 363 953 Antisense
CATACTGGAACCGTGGATTCCCACA 645 209 1039 Antisense
Sequence Source Affymetrix Proprietary Database