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[181243_at]

Description C38C3.3 /REP_DB=WormBase Gene ID /WP=CE08639 /TR=O17076 /GB=AAB70334.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 4.7
(-3)
A 		41.3
(1.2)
A 		11.2
(-2.3)
A 		56.8
(3)
A 		52
B 38.9
(0.4)
A 		9
(-3)
A 		18.7
(-1.9)
A 		61.6
(3)
A 		53
C 9.4
(-3)
A 		36.2
(0.3)
A 		10.1
(-2.9)
A 		57.9
(3)
A 		49
avr 17.7
(-2.4) 		28.8
(-1) 		13.3
(-3) 		58.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 5
(-3)
A 		5.4
(-3)
A 		23.8
(-2.2)
A 		19.6
(-2.4)
A 		66.6
(-0.4)
A 		148.3
(3)
P 		143
B 26.3
(-2.2)
A 		23.5
(-2.4)
A 		10.7
(-3)
A 		15
(-2.8)
A 		98.2
(1.3)
P 		131.4
(3)
P 		121
C 6.3
(-2.8)
A 		6
(-2.8)
A 		6.5
(-2.8)
A 		2.3
(-3)
A 		111.3
(2.3)
P 		126
(3)
P 		124
avr 12.5
(-3) 		11.6
(-3) 		13.7
(-2.9) 		12.3
(-3) 		92
(0.9) 		135.2
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(-3)
A 		9
(3)
A 		2.9
(-2)
A 		8.3
(2.4)
A 		7
B 12.4
(2.6)
A 		2.2
(-3)
A 		4.3
(-1.8)
A 		13.1
(3)
A 		11
C 3.1
(-3)
A 		10.4
(3)
A 		3.5
(-2.7)
A 		9.8
(2.5)
A 		7
avr 5.7
(-1.1) 		7.2
(0.2) 		3.6
(-3) 		10.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.9
(-2.8)
A 		5.2
(-2.3)
A 		5
(-2.3)
A 		20.1
(0.3)
A 		36.1
(3)
P 		35
B 9.1
(-2.2)
A 		7.8
(-2.3)
A 		2.6
(-3)
A 		4
(-2.8)
A 		39.9
(1.8)
P 		49
(3)
P 		46
C 2.3
(-2.7)
A 		1.8
(-2.8)
A 		1.7
(-2.8)
A 		0.5
(-3)
A 		36
(2.1)
P 		42.2
(3)
P 		42
avr 4.1
(-2.9) 		3.8
(-2.9) 		3.2
(-3) 		3.2
(-3) 		32
(1.4) 		42.4
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15236
Sequence Type Exemplar sequence
Representative Public ID C38C3.3 NCBI
Target Description C38C3.3 /REP_DB=WormBase Gene ID /WP=CE08639 /TR=O17076 /GB=AAB70334.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071029 NCBI Caenorhabditis elegans C38C3.3 (C38C3.3) mRNA, complete cds. 11/11 None
SNAP00000040092 ENSEMBL cdna:SNAP chromosome:CEL140:V:1496027:1497771:1 11/11 None
GENEFINDER00000040103 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1494624:1497771:1 11/11 None
C38C3.3 ENSEMBL cdna:known chromosome:CEL140:V:1494624:1497771:1 gene:C38C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028517 1/11 Cross Hyb Matching Probes None
SNAP00000006475 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006482 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1494623-1497771(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38C3.3
Entrez Gene 178642 Entrez gene
SwissProt O17076 EMBL-EBI
WormBase CE29711 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70334 Hypothetical protein C38C3.3 [Caenorhabditis elegans] ref|NP_503430.2| C38C3.3 [Caenorhabditis elegans] 1.0E-179
blast AAB70334 Hypothetical protein C38C3.3 [Caenorhabditis elegans] ref|NP_503430.2| C38C3.3 [Caenorhabditis elegans] 1.0E-123
blast CAI79141 Hypothetical protein C30G7.3 [Caenorhabditis elegans] ref|NP_001023688.1| C30G7.3 [Caenorhabditis elegans] 1.0E-113
blast CAI79141 Hypothetical protein C30G7.3 [Caenorhabditis elegans] ref|NP_001023688.1| C30G7.3 [Caenorhabditis elegans] 1.0E-102
blast CAE56102 Hypothetical protein CBG23700 [Caenorhabditis briggsae] 8.0E-52
Sequence
Target Sequence 
>C. ELEGANS:181243_AT
gacacgtgactattatcgaagcggcgacggaagttgttcaggataggtgtcacccccaac
cgaagtcctaccaaaaaattcgcattttcaatcatcgagatgatgaggtgaaaatcgata
atttttcggctcgtcgagctccaaaactccgcgacgatgatagtgacgagctcaacgtgg
atgtaccagctgaagatgatgatgatgtggaactcgatgacgtcatcgttgctcaaaatc
cggcgttttacggcacaattgaggcggagaagtgtgcggaacgagttgctgcacatcttt
cgatggcctgtgagaacatggaacgtctgcaatttgtgagcgaggccgtgtatccacaga
gtgctgatcatttggttggtgattgcgaaatatggaaagtttgtattgattttttgcaga
agaaacttcaagaaatcgatgatgacgtcaaggatttcaattggcagatgagagagcgtc
gtgtcaaggcttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGTGACTATTATCGAAGCGGC 179 365 623 Antisense
GAAGCGGCGACGGAAGTTGTTCAGG 437 343 640 Antisense
GTTGTTCAGGATAGGTGTCACCCCC 108 439 655 Antisense
CGATAATTTTTCGGCTCGTCGAGCT 305 247 738 Antisense
CGTCGAGCTCCAAAACTCCGCGACG 658 245 754 Antisense
CGTCATCGTTGCTCAAAATCCGGCG 177 245 843 Antisense
AATCCGGCGTTTTACGGCACAATTG 285 155 859 Antisense
GAACGAGTTGCTGCACATCTTTCGA 699 347 901 Antisense
GTCTGCAATTTGTGAGCGAGGCCGT 641 465 947 Antisense
GGCCGTGTATCCACAGAGTGCTGAT 566 543 966 Antisense
GAGAGCGTCGTGTCAAGGCTTCAAA 434 393 1094 Antisense
Sequence Source Affymetrix Proprietary Database