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[181242_s_at]

Description C18H2.3 /REP_DB=WormBase Gene ID /WP=CE00844 /TR=Q18104 /GB=AAA50665.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 18.7
(-0.8)
A 		30.2
(0.7)
A 		1.6
(-3)
A 		48.3
(3)
A 		47
B 14.9
(-2.3)
A 		43.2
(3)
P 		11.2
(-3)
A 		31.6
(0.8)
A 		32
C 23.6
(-2.7)
A 		19
(-3)
A 		41.8
(-1.4)
A 		105.3
(3)
P 		86
avr 19.1
(-2.9) 		30.8
(-1.3) 		18.2
(-3) 		61.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 35.1
(2.4)
A 		3.5
(-3)
A 		6.2
(-2.5)
A 		38.3
(3)
A 		33.9
(2.2)
A 		20.3
(-0.1)
A 		35
B 11.9
(-3)
A 		12.4
(-2.8)
A 		21.2
(-0)
A 		13.5
(-2.5)
A 		23.5
(0.7)
A 		30.6
(3)
P 		19
C 20.7
(-0.5)
A 		28.4
(0.6)
A 		39.8
(2.1)
A 		46.2
(3)
A 		2.3
(-3)
A 		20.6
(-0.5)
A 		44
avr 22.6
(-0.4) 		14.8
(-3) 		22.4
(-0.5) 		32.7
(3) 		19.9
(-1.3) 		23.8
(0) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.8
(2.7)
A 		6.5
(2.5)
A 		0.4
(-3)
A 		7.1
(3)
A 		7
B 4.7
(-1.4)
A 		10.7
(3)
P 		2.6
(-3)
A 		6.7
(0)
A 		8
C 7.8
(-1.9)
A 		5.5
(-3)
A 		14.6
(1.4)
A 		17.8
(3)
P 		12
avr 6.4
(-2.3) 		7.6
(-0.8) 		5.9
(-3) 		10.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.5
(0.5)
A 		1.2
(-3)
A 		1.4
(-2.9)
A 		9.7
(2.7)
A 		10.2
(3)
A 		4.9
(-0.5)
A 		9
B 4.2
(-2.5)
A 		4.1
(-2.6)
A 		5.1
(-1.8)
A 		3.6
(-3)
A 		9.5
(1.5)
A 		11.4
(3)
P 		8
C 7.7
(1.5)
A 		8.7
(2.1)
A 		10.1
(3)
A 		9.3
(2.5)
A 		0.7
(-3)
A 		6.9
(1)
A 		9
avr 6.1
(-0.2) 		4.7
(-3) 		5.5
(-1.4) 		7.5
(2.6) 		6.8
(1.2) 		7.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181242_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6518
Sequence Type Exemplar sequence
Representative Public ID C18H2.3 NCBI
Target Description C18H2.3 /REP_DB=WormBase Gene ID /WP=CE00844 /TR=Q18104 /GB=AAA50665.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066275 NCBI Caenorhabditis elegans C18H2.3 (C18H2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004548 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7684316:7694167:-1 11/11 None
C18H2.3 ENSEMBL cdna:known chromosome:CEL140:III:7684293:7687080:-1 gene:C18H2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004538 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7684313-7694165(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H2.3
Entrez Gene 176081 Entrez gene
SwissProt Q18104 EMBL-EBI
WormBase CE30611 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM22033 Hypothetical protein C18H2.3 [Caenorhabditis elegans] ref|NP_498676.2| C18H2.3 [Caenorhabditis elegans] 0.0
blast T15566 hypothetical protein C18H2.3 - Caenorhabditis elegans 0.0
blast AAM22034 Hypothetical protein C18H2.5 [Caenorhabditis elegans] ref|NP_741231.1| C18H2.5 [Caenorhabditis elegans] 0.0
blast AAM22034 Hypothetical protein C18H2.5 [Caenorhabditis elegans] ref|NP_741231.1| C18H2.5 [Caenorhabditis elegans] 1.0E-159
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.9E-9
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.6E-12
Pfam IPR001357 EMBL-EBI BRCT 2.4E-10
Pfam IPR001357 EMBL-EBI BRCT 2.7E-11
Pfam IPR001357 EMBL-EBI BRCT 0.08
Pfam IPR002110 EMBL-EBI Ankyrin 8.7E-9
Pfam IPR002110 EMBL-EBI Ankyrin 41.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR001357 EMBL-EBI BRCT 2.7E-11
Pfam IPR001357 EMBL-EBI BRCT 0.08
Pfam IPR002110 EMBL-EBI Ankyrin 41.0
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498676.2 1 240-262
C18H2.3 1 240-262
GENEFINDER00000004548 3 795-817,1222-1241,1974-1996
Sequence
Target Sequence 
>C. ELEGANS:181242_S_AT
aatttctattagttttccaatctatcacatccatggaacctctgccaaatacaactcatt
gtattgtccaaacagaatttgatggaacactgaaaacgaatgatcttgatctattgattt
ggatattaaacggaataatttttgtgaaagagtcgtggatgacggattgcttagacaatg
agaagttgataaaacgagactgcgaatatttggtagaaaaagtcaaatacaagaatactg
tttacaacacagtacttcaatggtccgaggcaatggcaaaaagtacgatgccatatctct
atggtgcacatgttgtaatttcaatgaagaagtgtgaaaatttgaacaaattaaccgccc
tggtaaccatacatggatgtatgatgctcgcagaatttccggaaaagaataactacaatg
ttggatcccatccttatcttcatgctcatcttggacctctcttcatcattcatgacggat
ctttcgacctgacaaagtacaaaaatgatccggataaaatgtacactttgcttacggagg
aagagttcatgcacttcatgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCTATTAGTTTTCCAATCTAT 337 175 6368 Antisense
ACATCCATGGAACCTCTGCCAAATA 296 107 6394 Antisense
GAACCTCTGCCAAATACAACTCATT 453 345 6403 Antisense
AACTCATTGTATTGTCCAAACAGAA 570 139 6420 Antisense
GTACTTCAATGGTCCGAGGCAATGG 578 459 6619 Antisense
AAAAGTACGATGCCATATCTCTATG 458 129 6646 Antisense
TAACCGCCCTGGTAACCATACATGG 332 637 6719 Antisense
ATGATGCTCGCAGAATTTCCGGAAA 181 47 6748 Antisense
AATGTTGGATCCCATCCTTATCTTC 430 163 6784 Antisense
ATGTACACTTTGCTTACGGAGGAAG 626 47 6886 Antisense
GAAGAGTTCATGCACTTCATGCTCA 401 339 6907 Antisense
Sequence Source Affymetrix Proprietary Database