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[181241_at]

Description F45F2.1 /REP_DB=WormBase Gene ID /WP=CE10518 /TR=Q22980 /GB=AAC48025.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 01      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 6.7
(-2.6)
A 		5.7
(-3)
A 		11.9
(-0.4)
A 		19.9
(3)
A 		14
B 8.4
(-3)
A 		8.3
(-3)
A 		19.7
(-1.1)
A 		44.3
(3)
A 		36
C 32.4
(2.7)
A 		8.6
(-3)
A 		14.2
(-1.7)
A 		33.5
(3)
A 		25
avr 15.8
(-1) 		7.5
(-3) 		15.3
(-1.1) 		32.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 25.3
(-1.5)
A 		6.4
(-2.8)
A 		2.5
(-3)
A 		96.5
(3)
P 		83
(2.1)
A 		13.5
(-2.3)
A 		94
B 4.7
(-3)
A 		5.6
(-3)
A 		6.8
(-2.9)
A 		130.9
(3)
A 		63.8
(-0.2)
M 		52.2
(-0.7)
A 		126
C 21.5
(-2.3)
A 		10.3
(-3)
A 		23.7
(-2.1)
A 		102
(3)
P 		90.2
(2.2)
P 		29
(-1.8)
A 		92
avr 17.2
(-2.4) 		7.4
(-3) 		11
(-2.8) 		109.8
(3) 		79
(1.2) 		31.6
(-1.6) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.4
(0.8)
A 		1.2
(-3)
A 		3.1
(3)
A 		2.9
(2.4)
A 		2
B 2.7
(-2.4)
A 		2
(-3)
A 		4.6
(-0.9)
A 		9.4
(3)
A 		7
C 10.7
(3)
A 		2.5
(-3)
A 		5
(-1.2)
A 		5.6
(-0.7)
A 		8
avr 5.3
(2) 		1.9
(-3) 		4.2
(0.4) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 4.7
(-2)
A 		2.3
(-2.6)
A 		0.5
(-3)
A 		24.5
(2.9)
P 		25
(3)
A 		3.3
(-2.3)
A 		25
B 1.6
(-3)
A 		1.9
(-2.9)
A 		1.7
(-3)
A 		34.7
(3)
A 		25.9
(1.4)
M 		19.5
(0.2)
A 		33
C 8
(-1.9)
A 		3.1
(-3)
A 		6
(-2.3)
A 		20.5
(1)
P 		29.2
(3)
P 		9.7
(-1.5)
A 		26
avr 4.8
(-2.4) 		2.4
(-3) 		2.7
(-2.9) 		26.6
(3) 		26.7
(3) 		10.8
(-0.9) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11374
Sequence Type Exemplar sequence
Representative Public ID F45F2.1 NCBI
Target Description F45F2.1 /REP_DB=WormBase Gene ID /WP=CE10518 /TR=Q22980 /GB=AAC48025.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072801 NCBI Caenorhabditis elegans F45F2.1 (F45F2.1) mRNA, complete cds. 11/11 None
SNAP00000030775 ENSEMBL cdna:SNAP chromosome:CEL140:V:8540516:8542202:1 11/11 None
GENEFINDER00000030783 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8538176:8542202:1 11/11 None
F45F2.1 ENSEMBL cdna:known chromosome:CEL140:V:8540058:8542202:1 gene:F45F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8540058-8542203(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45F2.1
Entrez Gene 185805 Entrez gene
SwissProt Q22980 EMBL-EBI
WormBase CE10518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48025 Hypothetical protein F45F2.1 [Caenorhabditis elegans] ref|NP_505202.1| F45F2.1 [Caenorhabditis elegans] 0.0
blast CAE58370 Hypothetical protein CBG01497 [Caenorhabditis briggsae] 1.0E-157
blast CAE58370 Hypothetical protein CBG01497 [Caenorhabditis briggsae] 1.0E-136
blast CAE58370 Hypothetical protein CBG01497 [Caenorhabditis briggsae] 1.0E-135
blast AAC48028 Hypothetical protein F45F2.5 [Caenorhabditis elegans] ref|NP_505196.1| F45F2.5 [Caenorhabditis elegans] 2.0E-55
blast AAC48028 Hypothetical protein F45F2.5 [Caenorhabditis elegans] ref|NP_505196.1| F45F2.5 [Caenorhabditis elegans] 3.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 2.1E-75
Pfam IPR007125 EMBL-EBI Histone core 4.9E-47
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505202.1 9 10-29,36-58,68-90,148-170,194-216,229-251,278-300,312-334,349-371
F45F2.1 9 10-29,36-58,68-90,148-170,194-216,229-251,278-300,312-334,349-371
SNAP00000030775 6 81-103,127-149,162-184,211-233,245-267,282-304
GENEFINDER00000030783 11 159-181,188-210,236-258,265-287,297-319,377-399,423-445,458-480,507-529,549-571,591-613
Sequence
Target Sequence 
>C. ELEGANS:181241_AT
gggattgcttggagtaattcgtggtgatcaactgctagacacaaaagggattgtaattgc
atcatttcttacgcgagcaattgaagttttgattcaagcaatacttttattttatcttct
gaagaaaggtggaagtgttgaaccatgtgatactattggaaagcaatcaattacattttt
aattgcattgaacatgattctttttggatttcatgctatagaaggatctattcgaacata
tggtttcccaacaaagatcgatgatacaagcaaaatgtttctcaagatctgcttgcctct
cgtggttttcttcagattccattgttcggtctgctttgctgaaatctggaaagtctatta
tcatttgatcccgacgagccaatcttcgcggcaaagtgtaatcgaaaatacaaccctaga
tgatccgactgcttcagccactcctatttctgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATTGCTTGGAGTAATTCGTGGT 545 495 894 Antisense
AATTCGTGGTGATCAACTGCTAGAC 281 177 909 Antisense
GCATCATTTCTTACGCGAGCAATTG 406 309 952 Antisense
GATTCTTTTTGGATTTCATGCTATA 383 431 1089 Antisense
CTATTCGAACATATGGTTTCCCAAC 406 223 1121 Antisense
TGTTTCTCAAGATCTGCTTGCCTCT 431 561 1169 Antisense
TTTCTTCAGATTCCATTGTTCGGTC 346 671 1200 Antisense
GTTCGGTCTGCTTTGCTGAAATCTG 217 443 1217 Antisense
TATCATTTGATCCCGACGAGCCAAT 274 659 1252 Antisense
TACAACCCTAGATGATCCGACTGCT 227 641 1302 Antisense
CTTCAGCCACTCCTATTTCTGCTGA 554 221 1325 Antisense
Sequence Source Affymetrix Proprietary Database