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[181240_at] 7TM chemoreceptor, srw family

Description C44C3.3 /REP_DB=WormBase Gene ID /WP=CE24847 /TR=P91157 /GB=AAG23989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 03      6grp_cgc > 99      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 45.4
(-2.2)
A 		25
(-3)
A 		41.1
(-2.3)
A 		172
(3)
A 		147
B 58
(-2.8)
M 		85.9
(1.6)
A 		56.8
(-3)
A 		94.5
(3)
A 		38
C 77.3
(-0.7)
A 		39.9
(-2.6)
A 		30.9
(-3)
A 		151.2
(3)
A 		120
avr 60.2
(-1.9) 		50.3
(-2.5) 		42.9
(-3) 		139.2
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 47.2
(-0.9)
A 		40.3
(-1.7)
A 		81.4
(3)
A 		40.3
(-1.7)
A 		49.6
(-0.6)
A 		29.1
(-3)
A 		52
B 55.5
(-0.7)
A 		69.8
(1.5)
A 		41.7
(-2.9)
A 		62.8
(0.4)
A 		79.4
(3)
A 		40.8
(-3)
A 		39
C 36.9
(-0.1)
A 		73.1
(3)
A 		4.1
(-3)
A 		25.1
(-1.2)
A 		59.1
(1.8)
A 		67.1
(2.5)
A 		69
avr 46.5
(-1.8) 		61.1
(2.5) 		42.4
(-3) 		42.7
(-2.9) 		62.7
(3) 		45.7
(-2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16.5
(0.4)
A 		5.4
(-3)
A 		10.7
(-1.4)
A 		25.2
(3)
A 		20
B 18.5
(1)
M 		21.2
(3)
A 		13.2
(-3)
A 		20.1
(2.2)
A 		8
C 25.6
(3)
A 		11.5
(-2.7)
A 		10.8
(-3)
A 		25.5
(3)
A 		15
avr 20.2
(1.3) 		12.7
(-2.5) 		11.6
(-3) 		23.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.7
(-2.1)
A 		14.3
(1.1)
A 		17.7
(3)
A 		10.2
(-1.2)
A 		15
(1.5)
A 		7.1
(-3)
A 		11
B 19.3
(-0.5)
A 		23.2
(0.6)
A 		10.1
(-3)
A 		16.6
(-1.2)
A 		32.2
(3)
A 		15.2
(-1.6)
A 		22
C 13.7
(0.5)
A 		22.3
(2.9)
A 		1.1
(-3)
A 		5.1
(-1.9)
A 		19.1
(2)
A 		22.5
(3)
A 		21
avr 13.9
(-0.9) 		19.9
(1.9) 		9.6
(-3) 		10.6
(-2.5) 		22.1
(3) 		14.9
(-0.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15456
Sequence Type Exemplar sequence
Representative Public ID C44C3.3 NCBI
Target Description C44C3.3 /REP_DB=WormBase Gene ID /WP=CE24847 /TR=P91157 /GB=AAG23989.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071405 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-138) (srw-138) mRNA, complete cds. 11/11 A 
GENEFINDER00000011852 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2961459:2966529:-1 11/11 None
C44C3.3 ENSEMBL cdna:known chromosome:CEL140:V:2961509:2962887:-1 gene:C44C3.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071398 2/11 Cross Hyb Matching Probes None
SNAP00000011846 6/11 Cross Hyb Matching Probes None
H27D07.4 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2961571-2962887(-) 100.0 100.0
chrV:2942510-2943786(-) 92.65 92.65
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-138
Ensembl C44C3.3
Entrez Gene 183442 Entrez gene
SwissProt Q8IFY3 EMBL-EBI
WormBase CE32611 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73865 Serpentine receptor, class w protein 138 [Caenorhabditis elegans] ref|NP_503806.2| Serpentine Receptor, class W family member (srw-138) [Caenorhabditis elegans] 0.0
blast T25624 hypothetical protein C44C3.3 - Caenorhabditis elegans 0.0
blast T33244 hypothetical protein H27D07.4 - Caenorhabditis elegans 0.0
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503806.2 6 36-58,68-87,157-179,221-243,270-292,307-329
C44C3.3 6 36-58,68-87,157-179,221-243,270-292,307-329
GENEFINDER00000011852 19 37-59,66-85,95-117,149-171,211-233,257-279,355-377,402-424,434-456,477-496,534-565,582-604,624-646,684-706,716-735,805-827,869-891,918-940,955-977
Sequence
Target Sequence 
>C. ELEGANS:181240_AT
gattgtcaacggacttgtttcaaatataattccgtgtgttcttttcccggcagtaacatt
cctattggtcgtcgagctctggaaatccgacaaaaagcggaaaaatctttcttccacggc
aaatgccaacgactctagaaaaaccacaagactggtattctacatatcccttacgttttt
tatcgccgaatttccgcttggaataacaacgggtgcaacatggttttttctcgatgttcc
tggaatgaaaacaataatgagttacttctttttcaacttttcaatgctcctgtctgcaaa
cacagctacccactgcatagtttgcttcttcatgtcatctcaatatcggattgctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTCAACGGACTTGTTTCAAAT 456 435 669 Antisense
TATAATTCCGTGTGTTCTTTTCCCG 406 659 693 Antisense
TTCTTTTCCCGGCAGTAACATTCCT 590 445 707 Antisense
GGCAGTAACATTCCTATTGGTCGTC 242 535 717 Antisense
TCTTTCTTCCACGGCAAATGCCAAC 331 615 774 Antisense
ATGCCAACGACTCTAGAAAAACCAC 147 1 791 Antisense
ACTTTTCAATGCTCCTGTCTGCAAA 262 103 944 Antisense
TGCTCCTGTCTGCAAACACAGCTAC 333 581 953 Antisense
AACACAGCTACCCACTGCATAGTTT 542 135 967 Antisense
CCACTGCATAGTTTGCTTCTTCATG 141 275 978 Antisense
GTCATCTCAATATCGGATTGCTGCA 84 467 1002 Antisense
Sequence Source Affymetrix Proprietary Database