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[181238_at]

Description T22B2.3 /REP_DB=WormBase Gene ID /WP=CE13932 /TR=O45193 /GB=AAC04440.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 20.4
(-3)
A 		35.9
(-1.7)
A 		32.1
(-2)
A 		93.5
(3)
A 		73
B 16.7
(-3)
A 		36.5
(2.6)
A 		37.8
(3)
P 		33.2
(1.7)
A 		21
C 40.8
(-0.9)
P 		45.8
(-0.3)
P 		22.3
(-3)
A 		74.1
(3)
A 		52
avr 26
(-3) 		39.4
(-1) 		30.7
(-2.3) 		66.9
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 37.6
(2.4)
A 		18.6
(-1.7)
A 		40.4
(3)
A 		34.4
(1.7)
A 		12.7
(-3)
A 		26.1
(-0.1)
A 		28
B 18.2
(0.5)
A 		25.8
(2.1)
A 		4.7
(-2.5)
A 		3.5
(-2.7)
A 		30
(3)
A 		2.2
(-3)
A 		28
C 5.3
(-3)
A 		37.1
(3)
A 		25.2
(0.8)
A 		37.1
(3)
A 		14.2
(-1.3)
A 		26.2
(0.9)
A 		32
avr 20.4
(-1.5) 		27.2
(3) 		23.4
(0.5) 		25
(1.5) 		19
(-2.5) 		18.2
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.4
(-3)
A 		7.8
(-2.6)
A 		8.4
(-2)
A 		13.7
(3)
A 		6
B 5.3
(-3)
A 		9
(3)
A 		8.8
(2.7)
P 		7.1
(-0.1)
A 		4
C 13.5
(3)
P 		13.2
(2.7)
P 		7.8
(-3)
A 		12.5
(1.9)
A 		6
avr 8.7
(-2.1) 		10
(0.6) 		8.3
(-3) 		11.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.9
(0.7)
A 		6.6
(0.4)
A 		8.8
(3)
A 		8.7
(2.9)
A 		3.8
(-3)
A 		6.3
(-0)
A 		5
B 6.3
(-0.1)
A 		8.6
(1.1)
A 		1.1
(-2.8)
A 		0.9
(-2.9)
A 		12.2
(3)
A 		0.8
(-3)
A 		11
C 2
(-3)
A 		11.3
(3)
A 		6.4
(-0.2)
A 		7.5
(0.5)
A 		4.6
(-1.3)
A 		8.8
(1.4)
A 		9
avr 5.1
(-3) 		8.8
(3) 		5.4
(-2.5) 		5.7
(-2) 		6.9
(-0.1) 		5.3
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18589
Sequence Type Exemplar sequence
Representative Public ID T22B2.3 NCBI
Target Description T22B2.3 /REP_DB=WormBase Gene ID /WP=CE13932 /TR=O45193 /GB=AAC04440.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076277(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076277 NCBI Caenorhabditis elegans T22B2.3 (T22B2.3) mRNA, complete cds. 11/11 None
T22B2.3 ENSEMBL cdna:known chromosome:CEL140:X:3918274:3919813:1 gene:T22B2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014693 8/11 Cross Hyb Matching Probes None
SNAP00000014684 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3918274-3919814(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B2.3
Entrez Gene 188718 Entrez gene
SwissProt O45193 EMBL-EBI
WormBase CE13932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04440 Hypothetical protein T22B2.3 [Caenorhabditis elegans] ref|NP_508678.1| T22B2.3 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508678.1 2 288-310,338-360
T22B2.3 2 288-310,338-360
Sequence
Target Sequence 
>C. ELEGANS:181238_AT
gaagtccgttcatctgttcattacgattggcactgctgagtacctgaaggaagtgataaa
cattcttgatttcatcaaaaaattgggaaaacttgccaaagaatctttgctcgtggtgac
tattttgcgaaacagttacaagtactgttgttctgcacgagccgtgaaagatcggaacaa
aatccttgaatttgtaattctctgccgcatcagaaaaaatgaagtttttgaagtacagag
tggaagagatattggaggagcatccgaatttgaaaaacattccaattgtttgacagattc
cttttacccattccttaaaaatattattaagttttttttgctatcagtgttttgccttat
tctattttctatgcaaactcttttttttccaaatcaaaatcatgagttttttctatgccg
agttggtattttcagaacctcttacaattattcttgctttattgattttttacgttcaca
attaccttccatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTCCGTTCATCTGTTCATTACG 666 335 555 Antisense
GATTGGCACTGCTGAGTACCTGAAG 680 433 579 Antisense
GAATCTTTGCTCGTGGTGACTATTT 148 329 655 Antisense
CAAGTACTGTTGTTCTGCACGAGCC 146 185 693 Antisense
TGAATTTGTAATTCTCTGCCGCATC 205 577 741 Antisense
GTTTGACAGATTCCTTTTACCCATT 599 451 842 Antisense
GCTATCAGTGTTTTGCCTTATTCTA 571 303 894 Antisense
TTCTATGCAAACTCTTTTTTTTCCA 237 679 921 Antisense
GTTGGTATTTTCAGAACCTCTTACA 414 435 976 Antisense
GAACCTCTTACAATTATTCTTGCTT 154 347 989 Antisense
TACGTTCACAATTACCTTCCATTTT 212 649 1025 Antisense
Sequence Source Affymetrix Proprietary Database