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[181237_at]

Description F22F7.3 /REP_DB=WormBase Gene ID /WP=CE17693 /TR=Q9GZF2 /GB=AAF99913.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 36.3
(-0.9)
A 		47.6
(1)
A 		23.4
(-3)
A 		60
(3)
A 		37
B 20.4
(-3)
A 		43.6
(3)
A 		22.7
(-2.4)
A 		28.6
(-0.9)
A 		23
C 18.3
(-3)
A 		35.5
(-1.1)
A 		35.3
(-1.2)
A 		73.6
(3)
A 		55
avr 25
(-3) 		42.2
(0.5) 		27.1
(-2.6) 		54.1
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.1
(-1.2)
A 		13.2
(-2.8)
A 		34.8
(3)
A 		12.4
(-3)
A 		33.7
(2.7)
A 		24
(0.1)
A 		22
B 25.5
(3)
A 		19.5
(1.5)
A 		2.2
(-2.9)
A 		1.8
(-3)
A 		23.7
(2.5)
A 		16.4
(0.7)
A 		24
C 29.1
(-0.6)
A 		23.8
(-1.6)
A 		16
(-3)
A 		48.4
(3)
A 		28.9
(-0.6)
A 		25.3
(-1.3)
A 		32
avr 24.6
(0.7) 		18.8
(-2.4) 		17.7
(-3) 		20.9
(-1.3) 		28.8
(3) 		21.9
(-0.7) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 13.2
(3)
A 		10.3
(0.5)
A 		6.1
(-3)
A 		8.8
(-0.7)
A 		7
B 6.5
(-1.7)
A 		10.8
(3)
A 		5.3
(-3)
A 		6.1
(-2.1)
A 		6
C 6.1
(-3)
A 		10.2
(0.9)
A 		12.3
(2.9)
A 		12.4
(3)
A 		6
avr 8.6
(-1.3) 		10.4
(3) 		7.9
(-3) 		9.1
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.5
(-2.7)
A 		4.7
(-1.6)
A 		7.6
(0.8)
A 		3.1
(-3)
A 		10.2
(3)
A 		5.8
(-0.7)
A 		7
B 8.9
(2.5)
A 		6.5
(1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		9.6
(3)
A 		6.1
(0.7)
A 		9
C 10.8
(3)
A 		7.3
(-0.1)
A 		4.1
(-3)
A 		9.7
(2)
A 		9.4
(1.7)
A 		8.5
(0.9)
A 		7
avr 7.7
(0.9) 		6.2
(-0.8) 		4.1
(-3) 		4.4
(-2.7) 		9.7
(3) 		6.8
(-0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15889
Sequence Type Exemplar sequence
Representative Public ID F22F7.3 NCBI
Target Description F22F7.3 /REP_DB=WormBase Gene ID /WP=CE17693 /TR=Q9GZF2 /GB=AAF99913.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071173
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000032279 ENSEMBL cdna:SNAP chromosome:CEL140:V:2112733:2119465:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071173 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032285 8/11 Cross Hyb Matching Probes None
F22F7.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2110568-2115386(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T33184 hypothetical protein F22F7.3 - Caenorhabditis elegans 0.0
blast AAF99913 Hypothetical protein F22F7.3 [Caenorhabditis elegans] ref|NP_503574.2| F22F7.3 [Caenorhabditis elegans] 0.0
blast CAE62246 Hypothetical protein CBG06302 [Caenorhabditis briggsae] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.8E-108
Sequence
Target Sequence 
>C. ELEGANS:181237_AT
gtcagggacggagcggttccggtgaatccgggggataatattacacagctgattagtgat
caacatttactggaaattgacatggaaatgaagagcatcctcaccagtgaaccaattgcg
gcactttcggcaacccttccaaaaacggatttctacatgccaatcattttcaagtgctac
aatgactcattctatcatctccgtgacacaaaaactctcctgaatgacgtcacttgtgta
aatgcatttgattgcgagctccctcaacaggaaggaatgccgtgtacacattcagatgcc
acgtatcactcaggaccgcccatgtttccaatcacattccattgggcgacggatgcatac
tttagtattggcagaagacagcaagtattgactgtacggagattcggaaatggagataaa
aagtgcggaacctattttggattgagaatagagataccatttcggcatacgcctcaacca
aattcaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGGGACGGAGCGGTTCCGGTGA 202 457 1237 Antisense
TGAAGAGCATCCTCACCAGTGAACC 442 575 1325 Antisense
GTGAACCAATTGCGGCACTTTCGGC 178 461 1343 Antisense
CAATGACTCATTCTATCATCTCCGT 367 183 1416 Antisense
TCTCCGTGACACAAAAACTCTCCTG 367 611 1434 Antisense
AACTCTCCTGAATGACGTCACTTGT 476 141 1449 Antisense
TGCGAGCTCCCTCAACAGGAAGGAA 521 581 1489 Antisense
TTGGGCGACGGATGCATACTTTAGT 475 697 1578 Antisense
AAAGTGCGGAACCTATTTTGGATTG 393 121 1656 Antisense
AGAGATACCATTTCGGCATACGCCT 53 69 1686 Antisense
CATACGCCTCAACCAAATTCAATAT 17 215 1702 Antisense
Sequence Source Affymetrix Proprietary Database