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[181236_at]

Description T07H3.1 /REP_DB=WormBase Gene ID /WP=CE19562 /TR=O76612 /GB=AAC26310.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 11      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 115.9
(-1.3)
M 		120.5
(-1.1)
A 		83.8
(-3)
A 		199.4
(3)
P 		116
B 133.2
(-1.7)
P 		104.2
(-3)
A 		120.8
(-2.3)
M 		237.5
(3)
P 		133
C 126.8
(-0.6)
P 		131.7
(-0.2)
A 		102.5
(-3)
A 		164.3
(3)
P 		62
avr 125.3
(-1.6) 		118.8
(-2) 		102.4
(-3) 		200.4
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 102.2
(2.8)
A 		98.9
(2.5)
A 		104.4
(3)
A 		66.9
(-0.6)
P 		42.5
(-3)
A 		91.2
(1.7)
A 		62
B 116.8
(2.6)
P 		120
(3)
A 		85.8
(-0.8)
A 		68.3
(-2.8)
A 		66.1
(-3)
A 		82.9
(-1.1)
A 		54
C 68
(-3)
M 		86.4
(-1.5)
A 		141.1
(3)
P 		83.9
(-1.7)
A 		69.2
(-2.9)
A 		72
(-2.7)
A 		73
avr 95.7
(1.3) 		101.8
(2) 		110.4
(3) 		73
(-1.4) 		59.3
(-3) 		82
(-0.3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 42.2
(3)
M 		26.2
(-1.7)
A 		21.9
(-3)
A 		29.2
(-0.8)
P 		20
B 42.5
(1)
P 		25.7
(-3)
A 		28
(-2.4)
M 		50.6
(3)
P 		25
C 42
(3)
P 		37.9
(1.3)
A 		35.7
(0.4)
A 		27.7
(-3)
P 		14
avr 42.2
(3) 		29.9
(-2.4) 		28.5
(-3) 		35.8
(0.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 18.8
(-1.4)
A 		35.2
(3)
A 		22.7
(-0.3)
A 		17
(-1.9)
P 		12.8
(-3)
A 		22.2
(-0.5)
A 		22
B 40.7
(3)
P 		39.9
(2.8)
A 		20.8
(-2.3)
A 		18.1
(-3)
A 		26.9
(-0.7)
A 		30.9
(0.4)
A 		23
C 25.2
(-0.4)
M 		26.3
(-0)
A 		35.9
(3)
P 		16.9
(-3)
A 		22.4
(-1.3)
A 		24.1
(-0.7)
A 		19
avr 28.2
(1) 		33.8
(3) 		26.5
(0.3) 		17.3
(-3) 		20.7
(-1.8) 		25.7
(0.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5691
Sequence Type Exemplar sequence
Representative Public ID T07H3.1 NCBI
Target Description T07H3.1 /REP_DB=WormBase Gene ID /WP=CE19562 /TR=O76612 /GB=AAC26310.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061605 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-113) (tag-113) mRNA, complete cds. 11/11 None
SNAP00000009954 ENSEMBL cdna:SNAP chromosome:CEL140:II:1598034:1604555:1 11/11 None
GENEFINDER00000009956 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1601837:1604590:1 11/11 None
T07H3.1 ENSEMBL cdna:known chromosome:CEL140:II:1601794:1604614:1 gene:T07H3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1601835-1604589(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-47
Ensembl T07H3.1
Entrez Gene 173532 Entrez gene
SwissProt O76612 EMBL-EBI
WormBase CE28653 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494006 Temporarily Assigned Gene name family member (tag-113) [Caenorhabditis elegans] gb|AAC26310.2| Temporarily assigned gene name protein 113 [Caenorhabditis elegans] 0.0
blast NP_494004 T07H3.2 [Caenorhabditis elegans] gb|AAC26309.1| Hypothetical protein T07H3.2 [Caenorhabditis elegans] 1.0E-121
blast NP_494004 T07H3.2 [Caenorhabditis elegans] gb|AAC26309.1| Hypothetical protein T07H3.2 [Caenorhabditis elegans] 1.0E-62
blast AAD12866 Hypothetical protein Y49F6C.4 [Caenorhabditis elegans] ref|NP_494523.1| Y49F6C.4 [Caenorhabditis elegans] 4.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.7E-24
Pfam IPR002083 EMBL-EBI MATH 2.0E-13
Pfam IPR002083 EMBL-EBI MATH 1.1E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.6E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.9E-14
Pfam IPR002083 EMBL-EBI MATH 2.0E-13
Pfam IPR002083 EMBL-EBI MATH 1.1E-6
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.6E-29
Pfam IPR000210 EMBL-EBI BTB/POZ domain 3.9E-14
Sequence
Target Sequence 
>C. ELEGANS:181236_AT
ttccgaatcctcgctgacttcgaattgatcattgcgggcaaaaatggaggacgacctctg
aagtccaagacaaatggatgctttaacattgaaaaaacaaagaactccagtcaggagctt
ggtcaggatgttgagtggtcgaccattgtctatgactacatggtcgatggaaggttgacc
gtcgaggctcacgtcaatatcaccagggtcacttgcttggatgctccaaagttcaagaag
ctgaggaatttcgatgcaaccgggaattcgtgggatgtgatgctgattgttgccgggcag
aggttttttgtgttgaaggagatcctcatctccaactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGAATCCTCGCTGACTTCGAAT 512 697 1399 Antisense
GACTTCGAATTGATCATTGCGGGCA 471 371 1414 Antisense
GAGGACGACCTCTGAAGTCCAAGAC 386 403 1445 Antisense
CAGTCAGGAGCTTGGTCAGGATGTT 255 207 1506 Antisense
GTGGTCGACCATTGTCTATGACTAC 346 489 1533 Antisense
TGGAAGGTTGACCGTCGAGGCTCAC 566 545 1566 Antisense
CTCACGTCAATATCACCAGGGTCAC 632 227 1586 Antisense
GATGCAACCGGGAATTCGTGGGATG 704 411 1651 Antisense
GATGTGATGCTGATTGTTGCCGGGC 92 409 1672 Antisense
GTTGCCGGGCAGAGGTTTTTTGTGT 113 439 1687 Antisense
GAAGGAGATCCTCATCTCCAACTCC 100 335 1713 Antisense
Sequence Source Affymetrix Proprietary Database