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[181235_at]

Description F23F1.1 /REP_DB=WormBase Gene ID /WP=CE27996 /TR=O17072 /GB=AAK68346.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 85      6grp_total > 78      4grp_total > 56      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 749.2
(-3)
P 		835.2
(1.2)
P 		854
(2.1)
P 		873.1
(3)
P 		124
B 872.6
(1.3)
P 		757.6
(-3)
P 		918.2
(3)
P 		794.4
(-1.6)
P 		161
C 817.5
(-1.7)
P 		876.9
(-0.3)
P 		1017
(3)
P 		760.7
(-3)
P 		256
avr 813.1
(-2.8) 		823.2
(-2.3) 		929.7
(3) 		809.4
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 684.9
(-0.8)
P 		726.3
(-0.4)
P 		502.1
(-3)
P 		540.1
(-2.6)
P 		719.9
(-0.4)
P 		1011.6
(3)
P 		510
B 707.6
(-1.4)
P 		653.7
(-2.4)
P 		636.4
(-2.7)
P 		620.8
(-3)
P 		803.7
(0.5)
P 		938.4
(3)
P 		318
C 543.4
(-2.8)
P 		611.6
(-1.5)
P 		673.9
(-0.4)
P 		530.6
(-3)
P 		691.3
(-0.1)
P 		862.9
(3)
P 		332
avr 645.3
(-1.7) 		663.9
(-1.4) 		604.1
(-2.4) 		563.8
(-3) 		738.3
(-0.2) 		937.6
(3) 		374
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 272.8
(3)
P 		181.3
(-0.8)
P 		223.2
(0.9)
P 		127.8
(-3)
P 		145
B 278.3
(3)
P 		187.1
(-2)
P 		212.8
(-0.6)
P 		169.3
(-3)
P 		109
C 270.6
(0.8)
P 		252.1
(0.3)
P 		354.5
(3)
P 		128.3
(-3)
P 		226
avr 273.9
(3) 		206.8
(-0) 		263.5
(2.5) 		141.8
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 126.2
(-2.3)
P 		258.3
(3)
P 		109.3
(-3)
P 		137
(-1.9)
P 		217.2
(1.3)
P 		246.3
(2.5)
P 		149
B 246.2
(-0.2)
P 		217.6
(-1.1)
P 		154.5
(-3)
P 		164.4
(-2.7)
P 		326.5
(2.3)
P 		349.9
(3)
P 		195
C 201.4
(0.1)
P 		186.6
(-0.4)
P 		171.5
(-0.9)
P 		106.7
(-3)
P 		223.7
(0.9)
P 		288.8
(3)
P 		182
avr 191.3
(-0.9) 		220.8
(0.2) 		145.1
(-2.7) 		136
(-3) 		255.8
(1.5) 		295
(3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5916
Sequence Type Exemplar sequence
Representative Public ID F23F1.1 NCBI
Target Description F23F1.1 /REP_DB=WormBase Gene ID /WP=CE27996 /TR=O17072 /GB=AAK68346.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061245 NCBI Caenorhabditis elegans F23F1.9 (F23F1.9) mRNA, complete cds. 11/11 None
SNAP00000015913 ENSEMBL cdna:SNAP chromosome:CEL140:II:45045:47371:1 11/11 None
GENEFINDER00000015927 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:45045:47371:1 11/11 None
F23F1.9 ENSEMBL cdna:known chromosome:CEL140:II:45040:47467:1 gene:F23F1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:43944-47371(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.9
Entrez Gene 173386 Entrez gene
SwissProt Q95X83 EMBL-EBI
WormBase CE27997 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68347 Hypothetical protein F23F1.9 [Caenorhabditis elegans] ref|NP_493646.1| F23F1.9 [Caenorhabditis elegans] 0.0
blast T32269 hypothetical protein F23F1.1 - Caenorhabditis elegans 0.0
blast CAE62823 Hypothetical protein CBG07002 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR009668 EMBL-EBI A49-like RNA polymerase I associated factor 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181235_AT
tctatccaatttccttgttccttgaagacattgagattgacgcaattgaatcgatcgcca
ctgaactgatggaaaagaagaaaaaagagaaacttgaagctggaattccagagtgtgtta
ctcttattatgtacaatgaaaagaccaaacaacgtgcagccgcctatcttttactctcca
ccatgatcgagatcctcacaaaaatgggaaagcaaagacagttgctgagaaaagatttga
gtgagctaaagatgcccgatattctccgacagaaagttcaggcccagtttttcaatgata
gtactaatgagaaggggtacactggacgtggagccgaacgaatccgtctcaatgttaccg
actatgatcgttttatcgcgcacacacttgcattggcattgacattggcacccgagcaca
aagtaccgattactccatttcaacaagctcttagttatcagcctagtaaacttgagaaga
tgttccaagcactaggtgcagacctgattcgtctcgatgtggcgtctgctcaaactcttc
gttccctccgtgccgcgattctcttgaaacctccgagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATCCAATTTCCTTGTTCCTTGA 235 615 1328 Antisense
AAAGACCAAACAACGTGCAGCCGCC 555 123 1467 Antisense
ACTCTCCACCATGATCGAGATCCTC 169 101 1500 Antisense
TAAAGATGCCCGATATTCTCCGACA 175 641 1574 Antisense
GAATCCGTCTCAATGTTACCGACTA 55 329 1667 Antisense
GACTATGATCGTTTTATCGCGCACA 301 373 1687 Antisense
ATCGCGCACACACTTGCATTGGCAT 535 37 1702 Antisense
GACATTGGCACCCGAGCACAAAGTA 487 369 1728 Antisense
GATTACTCCATTTCAACAAGCTCTT 206 431 1755 Antisense
CTGATTCGTCTCGATGTGGCGTCTG 123 239 1831 Antisense
CGATTCTCTTGAAACCTCCGAGTCT 177 247 1883 Antisense
Sequence Source Affymetrix Proprietary Database