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[181234_at]

Description C39B10.3 /REP_DB=WormBase Gene ID /WP=CE03079 /TR=Q18521 /GB=CAA90335.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      6grp_total > 50      4grp_total > 28      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 56.1
(0.3)
A 		52.3
(-1.2)
A 		47.4
(-3)
A 		63.4
(3)
A 		16
B 62.3
(0.1)
P 		68.6
(1)
A 		38.7
(-3)
A 		83.7
(3)
A 		45
C 50
(2.5)
A 		52.1
(3)
A 		25.6
(-3)
A 		50.5
(2.6)
A 		27
avr 56.1
(1) 		57.7
(1.3) 		37.2
(-3) 		65.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 76.7
(-0.1)
P 		49
(-2.7)
P 		109.1
(3)
P 		79.7
(0.2)
P 		68.1
(-0.9)
P 		45.4
(-3)
A 		64
B 101.6
(0.6)
P 		71.9
(-1.8)
P 		130.1
(3)
P 		109
(1.3)
P 		57.7
(-3)
P 		57.6
(-3)
P 		73
C 77.4
(-1.3)
P 		138
(3)
P 		66.6
(-2.1)
A 		129.9
(2.4)
P 		53.2
(-3)
A 		89.3
(-0.4)
P 		85
avr 85.2
(0.3) 		86.3
(0.4) 		101.9
(2.4) 		106.2
(3) 		59.7
(-3) 		64.1
(-2.4) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 20.4
(3)
A 		11.4
(-1.9)
A 		12.4
(-1.3)
A 		9.3
(-3)
A 		11
B 19.9
(3)
P 		16.9
(1.3)
A 		9
(-3)
A 		17.8
(1.8)
A 		11
C 16.5
(3)
A 		15
(1.9)
A 		8.9
(-2.7)
A 		8.5
(-3)
A 		8
avr 18.9
(3) 		14.4
(-0.1) 		10.1
(-3) 		11.9
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 14.1
(-1.6)
P 		17.4
(-0)
P 		23.8
(3)
P 		20.2
(1.3)
P 		20.6
(1.5)
P 		11.1
(-3)
A 		13
B 35.4
(3)
P 		23.9
(-2)
P 		31.6
(1.4)
P 		28.9
(0.2)
P 		23.5
(-2.1)
P 		21.5
(-3)
P 		14
C 28.7
(-0.2)
P 		42.1
(3)
P 		17
(-3)
A 		26.1
(-0.8)
P 		17.2
(-3)
A 		29.9
(0.1)
P 		25
avr 26.1
(1.6) 		27.8
(3) 		24.1
(0) 		25.1
(0.8) 		20.4
(-3) 		20.8
(-2.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16074
Sequence Type Exemplar sequence
Representative Public ID C39B10.3 NCBI
Target Description C39B10.3 /REP_DB=WormBase Gene ID /WP=CE03079 /TR=Q18521 /GB=CAA90335.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077349 NCBI Caenorhabditis elegans C39B10.3 (C39B10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000006456 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10441904:10444602:1 11/11 None
SNAP00000006448 ENSEMBL cdna:SNAP chromosome:CEL140:X:10443544:10444602:1 10/11 None
C39B10.3 ENSEMBL cdna:known chromosome:CEL140:X:10443239:10444602:1 gene:C39B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10443238-10444602(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B10.3
Entrez Gene 183332 Entrez gene
SwissProt Q18521 EMBL-EBI
WormBase CE03079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90335 Hypothetical protein C39B10.3 [Caenorhabditis elegans] ref|NP_509750.1| C39B10.3 [Caenorhabditis elegans] 1.0E-102
blast CAA90335 Hypothetical protein C39B10.3 [Caenorhabditis elegans] ref|NP_509750.1| C39B10.3 [Caenorhabditis elegans] 7.0E-90
blast CAA90335 Hypothetical protein C39B10.3 [Caenorhabditis elegans] ref|NP_509750.1| C39B10.3 [Caenorhabditis elegans] 5.0E-86
Sequence
Target Sequence 
>C. ELEGANS:181234_AT
gacattagagcgccgttgcaactacgaaggacaatcgcttggaagcaacaaaactgacat
gaatgagaacgaagaataccaacagctattggagacgaaacggctccaagatcttgacct
tcagcatcacagagccgaaatcagacgcaatacagatgtaatacagtccatggaagaacg
cgtcgccagacaggaagagatgctcacgtttttagtagatgcgtccaagaaatacgatga
ggaacttgaagaaaagcgtgatgagaataaaaaagcgacaaaagaatacgaggagttgga
aaaagtggccgctaacttgaaggaaattatgaaccccggtgcattcatgactgagcatgg
gagtcttgcaacttgcagctcagctactgaggtcaaaaatatttctcaaaccacacctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTAGAGCGCCGTTGCAACTAC 71 371 60 Antisense
GACGAAACGGCTCCAAGATCTTGAC 568 379 153 Antisense
AGATCTTGACCTTCAGCATCACAGA 441 65 168 Antisense
GCATCACAGAGCCGAAATCAGACGC 347 307 183 Antisense
GTCCATGGAAGAACGCGTCGCCAGA 546 475 225 Antisense
AGATGCTCACGTTTTTAGTAGATGC 622 65 257 Antisense
GAAGGAAATTATGAACCCCGGTGCA 547 1 378 Antisense
ACCCCGGTGCATTCATGACTGAGCA 281 89 392 Antisense
GAGCATGGGAGTCTTGCAACTTGCA 643 387 412 Antisense
GCAACTTGCAGCTCAGCTACTGAGG 172 319 427 Antisense
AAAATATTTCTCAAACCACACCTCA 617 131 455 Antisense
Sequence Source Affymetrix Proprietary Database