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[181233_at]

Description T04C9.2 /REP_DB=WormBase Gene ID /WP=CE04877 /TR=Q9GP91 /GB=AAG01555.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 6.4
(-3)
A 		9.3
(-2.4)
A 		14.4
(-1.3)
A 		35.2
(3)
A 		29
B 5.9
(-2.6)
A 		16.6
(0.6)
A 		25
(3)
A 		4.4
(-3)
A 		21
C 8.9
(-2.4)
A 		7.6
(-2.6)
A 		4.7
(-3)
A 		48.6
(3)
A 		44
avr 7.1
(-3) 		11.2
(-1.9) 		14.7
(-1) 		29.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.9
(-1)
A 		8.8
(1.7)
A 		3.8
(-3)
A 		5.4
(-1.5)
A 		10.2
(3)
A 		4.3
(-2.5)
A 		6
B 13.5
(3)
A 		10.8
(1.2)
A 		5.4
(-2.3)
A 		5.8
(-2)
A 		4.3
(-3)
A 		5.3
(-2.3)
A 		9
C 6.9
(-1.3)
A 		9.3
(-0.1)
A 		3.4
(-3)
A 		15.6
(3)
A 		7.8
(-0.8)
A 		5.8
(-1.8)
A 		12
avr 8.8
(2.1) 		9.6
(3) 		4.2
(-3) 		8.9
(2.2) 		7.4
(0.6) 		5.1
(-2) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-2.4)
A 		2
(-3)
A 		3.8
(0.4)
A 		5.2
(3)
A 		3
B 1.9
(-1.8)
A 		4.1
(0.9)
A 		5.8
(3)
A 		0.9
(-3)
A 		5
C 2.9
(-1.8)
A 		2.2
(-2.5)
A 		1.6
(-3)
A 		8.2
(3)
A 		7
avr 2.4
(-3) 		2.8
(-2) 		3.7
(0.3) 		4.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(-2.2)
A 		3.1
(3)
A 		0.8
(-3)
A 		1.4
(-1.4)
A 		3.1
(3)
A 		1.1
(-2.2)
A 		2
B 4.7
(3)
A 		3.6
(1.1)
A 		1.3
(-3)
A 		1.5
(-2.6)
A 		1.8
(-2.1)
A 		2
(-1.8)
A 		3
C 2.6
(1.6)
A 		2.8
(2.2)
A 		0.9
(-3)
A 		3.1
(3)
A 		2.5
(1.4)
A 		2
(0)
A 		2
avr 2.8
(1.9) 		3.2
(3) 		1
(-3) 		2
(-0.3) 		2.5
(1.1) 		1.7
(-1.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7659
Sequence Type Exemplar sequence
Representative Public ID T04C9.2 NCBI
Target Description T04C9.2 /REP_DB=WormBase Gene ID /WP=CE04877 /TR=Q9GP91 /GB=AAG01555.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065904 NCBI Caenorhabditis elegans T04C9.2 (T04C9.2) mRNA, complete cds. 11/11 None
T04C9.2 ENSEMBL cdna:known chromosome:CEL140:III:5991822:5992172:1 gene:T04C9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5991820-5992171(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04C9.2
Entrez Gene 188054 Entrez gene
SwissProt Q9GP91 EMBL-EBI
WormBase CE04877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG01555 Hypothetical protein T04C9.2 [Caenorhabditis elegans] ref|NP_498305.1| T04C9.2 [Caenorhabditis elegans] 3.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498305.1 2 7-24,62-79
T04C9.2 2 7-24,62-79
Sequence
Target Sequence 
>C. ELEGANS:181233_AT
ctcgttcttcccatatatactcattccccccggagaattgttcttttccgcattgctgct
tcccgttgccgctgtcgtcgtccgcctttcctttcgattcgaatcggatcgacaagttcc
agacggcaagagtcatcccttccatccataaacgccatcactgtcgtcgtcgtcgtcgcc
ttcttctttgaaaaaatgagaaaagctagaaaaaatgacgaattgtgttggagtcctcgt
cct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTTCTTCCCATATATACTCATT 414 233 61 Antisense
CGTTCTTCCCATATATACTCATTCC 31 247 63 Antisense
CCCGGAGAATTGTTCTTTTCCGCAT 143 259 89 Antisense
CGGAGAATTGTTCTTTTCCGCATTG 575 243 91 Antisense
CGCCTTTCCTTTCGATTCGAATCGG 204 257 143 Antisense
TTTCCTTTCGATTCGAATCGGATCG 688 667 147 Antisense
GAATCGGATCGACAAGTTCCAGACG 578 329 161 Antisense
GATCGACAAGTTCCAGACGGCAAGA 470 417 167 Antisense
TCCAGACGGCAAGAGTCATCCCTTC 678 585 178 Antisense
CCATCCATAAACGCCATCACTGTCG 456 271 202 Antisense
CGAATTGTGTTGGAGTCCTCGTCCT 121 253 279 Antisense
Sequence Source Affymetrix Proprietary Database