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[181232_at]

Description T08B2.3 /REP_DB=WormBase Gene ID /WP=CE13423 /TR=Q9GYS4 /GB=AAG00013.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 41.4
(1.3)
A 		9.6
(-3)
A 		23.6
(-1.1)
A 		53.8
(3)
A 		44
B 45.8
(1.3)
A 		60.9
(3)
P 		9.8
(-2.7)
A 		7.5
(-3)
A 		53
C 54.9
(-2.3)
A 		63
(-1.6)
A 		45.9
(-3)
P 		118.2
(3)
A 		72
avr 47.4
(0.8) 		44.5
(0.3) 		26.4
(-3) 		59.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 28.4
(-0.5)
A 		3.9
(-3)
A 		61.6
(3)
A 		38.5
(0.6)
A 		46.5
(1.4)
A 		4.6
(-2.9)
A 		58
B 33.6
(1.2)
A 		23.1
(-0.7)
A 		44
(3)
A 		11.3
(-2.8)
A 		10.2
(-3)
A 		40.1
(2.3)
A 		34
C 14.9
(-1.2)
A 		36.4
(1.9)
A 		12
(-1.7)
A 		44.3
(3)
A 		19.6
(-0.6)
A 		2.7
(-3)
A 		42
avr 25.6
(-0.5) 		21.1
(-1.6) 		39.2
(3) 		31.4
(1) 		25.4
(-0.5) 		15.8
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.1
(3)
A 		2.1
(-3)
A 		6.2
(-1.1)
A 		7.9
(-0.3)
A 		13
B 14.6
(2.8)
A 		15
(3)
P 		2.3
(-2.7)
A 		1.6
(-3)
A 		13
C 18.2
(0.4)
A 		18.1
(0.2)
A 		16
(-3)
P 		19.9
(3)
A 		4
avr 16
(3) 		11.7
(-0.3) 		8.2
(-3) 		9.8
(-1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.2
(-1.1)
A 		1.4
(-2.9)
A 		13.4
(2.7)
A 		9.8
(1)
A 		14
(3)
A 		1.1
(-3)
A 		13
B 11.7
(1.4)
A 		7.7
(-0.7)
A 		10.7
(0.9)
A 		3
(-3)
A 		4.1
(-2.5)
A 		15
(3)
A 		12
C 5.5
(-0.3)
A 		11.1
(3)
A 		3.1
(-1.7)
A 		8.9
(1.7)
A 		6.4
(0.2)
A 		0.9
(-3)
A 		10
avr 7.5
(0.2) 		6.7
(-1.2) 		9.1
(3) 		7.2
(-0.4) 		8.2
(1.4) 		5.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.353
Sequence Type Exemplar sequence
Representative Public ID T08B2.3 NCBI
Target Description T08B2.3 /REP_DB=WormBase Gene ID /WP=CE13423 /TR=Q9GYS4 /GB=AAG00013.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059397 NCBI Caenorhabditis elegans T08B2.3 (T08B2.3) mRNA, complete cds. 11/11 None
T08B2.3 ENSEMBL cdna:known chromosome:CEL140:I:6236234:6237866:1 gene:T08B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6236162-6236614(+) 39.26 58.52
Public Domain and Genome References
Gene Title
Ensembl T08B2.3
Entrez Gene 188272 Entrez gene
SwissProt Q9GYS4 EMBL-EBI
WormBase CE13423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491798 T08B2.3 [Caenorhabditis elegans] gb|AAG00013.1| Hypothetical protein T08B2.3 [Caenorhabditis elegans] 6.0E-86
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 3.0E-18
blast NP_494047 F58E1.1 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491798.1 1 40-62
T08B2.3 1 40-62
Sequence
Target Sequence 
>C. ELEGANS:181232_AT
tgcactccgcctaactgttttggaagtttcgggaggcaaaactcgccaacgttgccaagt
agtgatgtgtgtgtatttaagtttcccgaaattcatcaatttctgtattgtctctctaaa
ctctccagccttgatttacatgccagttggcttcaggctggtgacccccccccccccctc
ccccactgtccgagacttaggtcctattacagattgtcaggctaaacaaatcctcaagac
tttctctttcaactctcccaagttttataaattatggccggcactgtatttgatactgga
aaaatcactgagaacctttaccaagcgcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACTCCGCCTAACTGTTTTGGAA 668 577 60 Antisense
ACTCGCCAACGTTGCCAAGTAGTGA 464 97 100 Antisense
TGTGTGTGTATTTAAGTTTCCCGAA 533 555 125 Antisense
TCTGTATTGTCTCTCTAAACTCTCC 113 609 161 Antisense
ACTCTCCAGCCTTGATTTACATGCC 168 99 179 Antisense
GCCAGTTGGCTTCAGGCTGGTGACC 622 277 201 Antisense
CCACTGTCCGAGACTTAGGTCCTAT 435 275 242 Antisense
AATCCTCAAGACTTTCTCTTTCAAC 602 167 288 Antisense
CTCTTTCAACTCTCCCAAGTTTTAT 630 225 303 Antisense
TATGGCCGGCACTGTATTTGATACT 232 655 332 Antisense
ACTGAGAACCTTTACCAAGCGCATC 456 97 366 Antisense
Sequence Source Affymetrix Proprietary Database