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[181231_at]

Description Y79H2A.2 /REP_DB=WormBase Gene ID /WP=CE23091 /TR=Q9U1R9 /GB=CAB54508.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 22.5
(-2.3)
A 		6.1
(-3)
A 		40.1
(-1.6)
P 		147
(3)
P 		141
B 32.7
(-1)
P 		35.9
(-0.5)
A 		18.5
(-3)
A 		60.2
(3)
P 		42
C 45.7
(-1.6)
P 		6.6
(-2.9)
A 		3.8
(-3)
A 		177.7
(3)
P 		174
avr 33.6
(-2.1) 		16.2
(-3) 		20.8
(-2.8) 		128.3
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 52
(2.8)
A 		34.3
(0.2)
A 		33.7
(0.1)
P 		22
(-1.6)
A 		53.4
(3)
P 		12.4
(-3)
A 		41
B 45.6
(-0.1)
P 		31.2
(-2.8)
A 		30.1
(-3)
A 		38.9
(-1.3)
P 		61.9
(3)
P 		31
(-2.8)
M 		32
C 27.4
(-0.5)
A 		7.8
(-3)
A 		14.5
(-2.1)
A 		54.1
(3)
P 		22.7
(-1.1)
M 		28.4
(-0.3)
A 		46
avr 41.7
(1.8) 		24.4
(-2.9) 		26.1
(-2.4) 		38.3
(0.9) 		46
(3) 		23.9
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 8.2
(-1)
A 		1.3
(-3)
A 		10.5
(-0.3)
P 		21.5
(3)
P 		20
B 10.4
(1.3)
P 		8.9
(0.2)
A 		4.3
(-3)
A 		12.8
(3)
P 		9
C 15.1
(-0.1)
P 		1.9
(-2.9)
A 		1.3
(-3)
A 		30
(3)
P 		29
avr 11.2
(-0.5) 		4
(-3) 		5.4
(-2.5) 		21.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 9.6
(0)
A 		12.2
(1.2)
A 		7.3
(-1)
P 		5.6
(-1.8)
A 		16.1
(3)
P 		3
(-3)
A 		13
B 15.9
(-0.1)
P 		10.4
(-2)
A 		7.3
(-3)
A 		10.3
(-2)
P 		25.1
(3)
P 		11.6
(-1.6)
M 		18
C 10.2
(2.5)
A 		2.4
(-3)
A 		3.7
(-2.1)
A 		10.9
(3)
P 		7.4
(0.5)
M 		9.5
(2)
A 		9
avr 11.9
(0.4) 		8.3
(-1.7) 		6.1
(-3) 		8.9
(-1.3) 		16.2
(3) 		8
(-1.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7652
Sequence Type Exemplar sequence
Representative Public ID Y79H2A.2 NCBI
Target Description Y79H2A.2 /REP_DB=WormBase Gene ID /WP=CE23091 /TR=Q9U1R9 /GB=CAB54508.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067166, NM_001027783
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018013 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12026491:12030117:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067166 2/11 Cross Hyb Matching Probes None
NM_001027783 5/11 Cross Hyb Matching Probes None
SNAP00000018006 4/11 Cross Hyb Matching Probes None
Y79H2A.12 5/11 Cross Hyb Matching Probes None
Y79H2A.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12026862-12030113(-) 85.49 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI06051 Hypothetical protein Y79H2A.12 [Caenorhabditis elegans] ref|NP_001022954.1| Y79H2A.12 [Caenorhabditis elegans] 6.0E-62
blast CAB54508 Hypothetical protein Y79H2A.2 [Caenorhabditis elegans] ref|NP_499567.2| Y79H2A.2 [Caenorhabditis elegans] 5.0E-37
blast AAF39777 Hypothetical protein C51G7.2 [Caenorhabditis elegans] 5.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018013 5 21-43,72-94,133-152,162-184,280-302
Sequence
Target Sequence 
>C. ELEGANS:181231_AT
gctcgtgagatattacgctgtcctaacagtctatcgttggacaaaactaccacgtgtcgc
tgcgggaccccggattacaccccgtattttttgcgttcaaacccgccacgtcataatttt
tttctcaatatttgaattatttttgtgtggatggcagacggtgttgaatgaggatcgtat
tacaagaacgactggaactatatccgcaattctgacacttgtcattctatacagtgttgt
caagaatcgagcgtctctattgaaaattgcaatgtatatatcgagcagattttcgaattt
ttgctatgatattcggcagggcttccatatatgcgctaaaacgcctgcctgcctgcctga
ccataaggcgaccctcgcctgcctctcgccttactccgcgccttatgctgatatattcca
acttgcattcgaattcggcgaaatccttgtaactccagtttatttttcaagtcaagtggc
gtcaggatacgaatcaaatgatacgtatcctaactttctcggcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGTGAGATATTACGCTGTCCTA 619 299 270 Antisense
GCTGTCCTAACAGTCTATCGTTGGA 325 295 286 Antisense
GAACGACTGGAACTATATCCGCAAT 623 347 455 Antisense
TATCCGCAATTCTGACACTTGTCAT 229 659 470 Antisense
GTGTTGTCAAGAATCGAGCGTCTCT 322 485 503 Antisense
GCTATGATATTCGGCAGGGCTTCCA 238 303 572 Antisense
GCAGGGCTTCCATATATGCGCTAAA 538 309 585 Antisense
TTACTCCGCGCCTTATGCTGATATA 503 681 660 Antisense
GCTGATATATTCCAACTTGCATTCG 263 295 676 Antisense
TCGGCGAAATCCTTGTAACTCCAGT 563 603 704 Antisense
ATACGTATCCTAACTTTCTCGGCGT 398 23 770 Antisense
Sequence Source Affymetrix Proprietary Database