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[181230_at]

Description K02F3.4 /REP_DB=WormBase Gene ID /WP=CE23848 /TR=Q21148 /GB=AAK21426.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 04      6grp_total > 06      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2258
1 2 3 4 range
A 4638.4
(3)
P 		3479.5
(-3)
P 		4497.7
(2.3)
P 		3875.2
(-1)
P 		1159
B 4615.6
(-0)
P 		4131.9
(-1.4)
P 		3523.2
(-3)
P 		5737.8
(3)
P 		2215
C 4106.9
(-3)
P 		4681.8
(3)
P 		4312.8
(-0.9)
P 		4606.4
(2.2)
P 		575
avr 4453.6
(0.3) 		4097.7
(-3) 		4111.2
(-2.9) 		4739.8
(3) 		642

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5233
1 2 3 4 5 6 range
A 6230.2
(3)
P 		4418
(0.2)
P 		3574.6
(-1.1)
P 		2371.5
(-3)
P 		2652
(-2.6)
P 		2393.5
(-3)
P 		3859
B 7594
(3)
P 		4961.6
(-0)
P 		2360.8
(-3)
P 		3062.4
(-2.2)
P 		2508.9
(-2.8)
P 		2818.7
(-2.5)
P 		5233
C 6486
(3)
P 		4513.2
(0.1)
P 		3022.4
(-2.1)
P 		2380.5
(-3)
P 		2999.2
(-2.1)
P 		2632.8
(-2.6)
P 		4106
avr 6770.1
(3) 		4630.9
(-0.1) 		2985.9
(-2.5) 		2604.8
(-3) 		2720
(-2.8) 		2615
(-3) 		4165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1122
1 2 3 4 range
A 1688.9
(3)
P 		755.3
(-2)
P 		1175.8
(0.3)
P 		567.2
(-3)
P 		1122
B 1471.9
(3)
P 		1020.5
(-1.1)
P 		816.4
(-3)
P 		1222.7
(0.7)
P 		656
C 1359.5
(1.8)
P 		1346
(1.7)
P 		1503.1
(3)
P 		776.7
(-3)
P 		726
avr 1506.8
(3) 		1040.6
(-1.3) 		1165.1
(-0.1) 		855.5
(-3) 		651

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2164
1 2 3 4 5 6 range
A 1148.5
(0.4)
P 		1571.3
(3)
P 		778.5
(-1.8)
P 		601.5
(-2.9)
P 		800.3
(-1.7)
P 		582.7
(-3)
P 		989
B 2642.3
(3)
P 		1651.5
(0.1)
P 		573.3
(-3)
P 		811.1
(-2.3)
P 		1019.3
(-1.7)
P 		1051.1
(-1.6)
P 		2069
C 2404.1
(3)
P 		1377.1
(-0.2)
P 		769.2
(-2.1)
P 		478.7
(-3)
P 		970.5
(-1.5)
P 		881.3
(-1.7)
P 		1925
avr 2065
(3) 		1533.3
(0.8) 		707
(-2.7) 		630.4
(-3) 		930
(-1.7) 		838.4
(-2.1) 		1435
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8256
Sequence Type Exemplar sequence
Representative Public ID K02F3.4 NCBI
Target Description K02F3.4 /REP_DB=WormBase Gene ID /WP=CE23848 /TR=Q21148 /GB=AAK21426.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064868 NCBI Caenorhabditis elegans K02F3.4 (K02F3.4) mRNA, complete cds. 11/11 None
GENEFINDER00000008349 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:833906:835600:1 11/11 None
SNAP00000008335 ENSEMBL cdna:SNAP chromosome:CEL140:III:834893:835600:1 9/11 None
K02F3.4.2 ENSEMBL cdna:known chromosome:CEL140:III:833619:835800:1 gene:K02F3.4 11/11 None
K02F3.4.1 ENSEMBL cdna:known chromosome:CEL140:III:834078:835803:1 gene:K02F3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:834451-835600(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zip-2
Ensembl K02F3.4
Entrez Gene 175240 Entrez gene
SwissProt Q21148 EMBL-EBI
WormBase CE23848 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21426 Hypothetical protein K02F3.4 [Caenorhabditis elegans] ref|NP_497269.1| K02F3.4 [Caenorhabditis elegans] 1.0E-116
blast T16528 hypothetical protein K02F3.4 - Caenorhabditis elegans 1.0E-116
blast T16528 hypothetical protein K02F3.4 - Caenorhabditis elegans 1.0E-115
blast AAK21426 Hypothetical protein K02F3.4 [Caenorhabditis elegans] ref|NP_497269.1| K02F3.4 [Caenorhabditis elegans] 1.0E-114
blast AAK21426 Hypothetical protein K02F3.4 [Caenorhabditis elegans] ref|NP_497269.1| K02F3.4 [Caenorhabditis elegans] 7.0E-66
blast T16528 hypothetical protein K02F3.4 - Caenorhabditis elegans 7.0E-66
Sequence
Target Sequence 
>C. ELEGANS:181230_AT
agcggaccgttatttgagcgagcccaacatgagcacgccacaagcttcccacgggagctt
tgaatttgatgtaccagagtacacatccttcgactatgcattcgatttcccaccggttcc
agaagccttcccaccagccgccaatagttcctcggctgcatctccagatgcagattttct
tgatctggattctctcatgagctgtgatatcacatctcttgacgcctacattcatgatga
ttccattgcctctccttctaacgcttcacacatttctcctccagcgtcggacattgatcc
agttgacgagttctttccacagcttgtgcacaataataaaattcaatcatcttcctcctc
aacagttgaaacgacaataacacgtgggcgcaaaacttcatcggtatcgtccgattcgtc
atcggactaccgtcataaacgggataagaacaatctagcatcccaaaaatctcgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGACCGTTATTTGAGCGAGCCC 191 75 318 Antisense
TGAGCGAGCCCAACATGAGCACGCC 523 569 332 Antisense
CACAAGCTTCCCACGGGAGCTTTGA 211 193 356 Antisense
GTACCAGAGTACACATCCTTCGACT 537 457 388 Antisense
TCGACTATGCATTCGATTTCCCACC 519 599 407 Antisense
ATCTCTTGACGCCTACATTCATGAT 81 33 531 Antisense
CTCCAGCGTCGGACATTGATCCAGT 8 237 596 Antisense
TCCAGTTGACGAGTTCTTTCCACAG 632 589 615 Antisense
GGCGCAAAACTTCATCGGTATCGTC 671 541 704 Antisense
GATTCGTCATCGGACTACCGTCATA 322 433 730 Antisense
ATCTAGCATCCCAAAAATCTCGTCA 133 33 770 Antisense
Sequence Source Affymetrix Proprietary Database