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[181229_at]

Description F23F1.2 /REP_DB=WormBase Gene ID /WP=CE09602 /TR=O17068 /GB=AAB70321.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 40      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 10
(-3)
A 		19.6
(-2.6)
A 		146.2
(3)
A 		75.2
(-0.1)
A 		136
B 40.5
(-1.7)
A 		82.2
(1.6)
A 		99.3
(3)
A 		23.5
(-3)
A 		76
C 44.4
(-3)
A 		59.7
(-1.8)
A 		122.2
(3)
A 		112.9
(2.3)
A 		78
avr 31.6
(-3) 		53.8
(-1.5) 		122.6
(3) 		70.5
(-0.4) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3533
1 2 3 4 5 6 range
A 26.2
(-3)
A 		86.1
(-2.9)
A 		84
(-2.9)
A 		815.5
(-1.7)
P 		3547
(3)
P 		1371.5
(-0.7)
P 		3521
B 14.2
(-3)
A 		73.1
(-2.9)
A 		48.2
(-2.9)
A 		716.2
(-1.7)
P 		3176.7
(3)
P 		1072.8
(-1)
P 		3163
C 54.1
(-3)
A 		150.5
(-2.8)
A 		75
(-3)
A 		1079.4
(-0.7)
P 		2770.8
(3)
P 		1257.5
(-0.3)
P 		2717
avr 31.5
(-3) 		103.2
(-2.9) 		69.1
(-2.9) 		870.4
(-1.4) 		3164.8
(3) 		1233.9
(-0.7) 		3133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 3.7
(-3)
A 		4.3
(-2.9)
A 		38.2
(3)
A 		11
(-1.7)
A 		35
B 12.9
(-0.4)
A 		20.3
(2.1)
A 		23
(3)
A 		5
(-3)
A 		18
C 14.7
(-3)
A 		17.2
(-2.5)
A 		42.6
(3)
A 		19
(-2.1)
A 		28
avr 10.4
(-3) 		13.9
(-2.1) 		34.6
(3) 		11.7
(-2.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1286
1 2 3 4 5 6 range
A 4.8
(-3)
A 		30.6
(-2.9)
A 		18.3
(-2.9)
A 		206.8
(-1.9)
P 		1070.3
(3)
P 		333.9
(-1.1)
P 		1066
B 4.9
(-3)
A 		24.3
(-2.9)
A 		11.7
(-3)
A 		189.7
(-2.1)
P 		1290.7
(3)
P 		400
(-1.2)
P 		1286
C 20.1
(-3)
A 		45.9
(-2.8)
A 		19.1
(-3)
A 		217.1
(-1.6)
P 		896.6
(3)
P 		420.9
(-0.3)
P 		878
avr 9.9
(-3) 		33.6
(-2.9) 		16.4
(-3) 		204.5
(-1.9) 		1085.9
(3) 		384.9
(-0.9) 		1076
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5169
Sequence Type Exemplar sequence
Representative Public ID F23F1.2 NCBI
Target Description F23F1.2 /REP_DB=WormBase Gene ID /WP=CE09602 /TR=O17068 /GB=AAB70321.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061240 NCBI Caenorhabditis elegans F23F1.2 (F23F1.2) mRNA, complete cds. 11/11 None
SNAP00000004423 ENSEMBL cdna:SNAP chromosome:CEL140:II:34488:35150:1 11/11 None
GENEFINDER00000004436 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:33762:35150:1 11/11 None
F23F1.2 ENSEMBL cdna:known chromosome:CEL140:II:34488:35150:1 gene:F23F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:34487-35150(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23F1.2
Entrez Gene 184900 Entrez gene
SwissProt O17068 EMBL-EBI
WormBase CE09602 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE62829 Hypothetical protein CBG07008 [Caenorhabditis briggsae] 1.0E-114
blast AAB70321 Hypothetical protein F23F1.2 [Caenorhabditis elegans] ref|NP_493641.1| F23F1.2 [Caenorhabditis elegans] 1.0E-99
blast AAB70321 Hypothetical protein F23F1.2 [Caenorhabditis elegans] ref|NP_493641.1| F23F1.2 [Caenorhabditis elegans] 2.0E-99
blast CAE62829 Hypothetical protein CBG07008 [Caenorhabditis briggsae] 1.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0055
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.25
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.34
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.35
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0055
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.25
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.34
Sequence
Target Sequence 
>C. ELEGANS:181229_AT
gtgagccttgccgagtacgaagagcatttccacgaagcctcaagcaagaatgaaaaatct
cggaccgcatactttgccaaagttttcgaagatttcgatgaagatttcaatatggcattg
agtcgtgaagaacttgaacgtgtgcttgctgaacgattcttagtcaaaccaagagaaaac
tttcccaaattgtttttcaagtttgacgtagacaagtccggaggacttgatctgactgaa
tacatgaaatttgatgctgaattcccattcgatcaaaccgatccagttggtggaggacca
tccaaatctaacaatcaccacgatcaaatgcacacagaagtccctcaagatgctgacgct
gctgcaattgcagccgtgttggcacaagcttcaccaacactgaataagagtccagtcggt
gttgctccaccccaaacgtcacctggattgcatccagtggcaccagggttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGCCTTGCCGAGTACGAAGAGC 57 481 82 Antisense
GAAGAGCATTTCCACGAAGCCTCAA 476 339 100 Antisense
AAATCTCGGACCGCATACTTTGCCA 684 115 136 Antisense
GAACTTGAACGTGTGCTTGCTGAAC 568 349 211 Antisense
GATGCTGAATTCCCATTCGATCAAA 320 413 334 Antisense
GGACCATCCAAATCTAACAATCACC 497 521 376 Antisense
AATGCACACAGAAGTCCCTCAAGAT 168 165 408 Antisense
AGATGCTGACGCTGCTGCAATTGCA 340 67 429 Antisense
TAAGAGTCCAGTCGGTGTTGCTCCA 641 637 486 Antisense
CCAAACGTCACCTGGATTGCATCCA 384 275 513 Antisense
GCATCCAGTGGCACCAGGGTTATTC 385 309 531 Antisense
Sequence Source Affymetrix Proprietary Database