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[181228_at]

Description F15E6.5 /REP_DB=WormBase Gene ID /WP=CE16994 /TR=O44493 /GB=AAB92057.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 58.4
(-3)
P 		105.8
(2.7)
P 		69.1
(-1.7)
P 		108.6
(3)
A 		50
B 48.5
(-3)
P 		91.3
(3)
P 		48.8
(-3)
A 		66.7
(-0.4)
A 		43
C 39.8
(-3)
A 		103.5
(3)
A 		57.2
(-1.4)
P 		54.6
(-1.6)
A 		64
avr 48.9
(-3) 		100.2
(3) 		58.4
(-1.9) 		76.6
(0.2) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 107.3
(3)
A 		40.3
(-3)
A 		61.8
(-1.1)
A 		74.5
(0.1)
M 		58.6
(-1.4)
A 		76.1
(0.2)
A 		67
B 69.6
(2.5)
P 		31.5
(-2.8)
A 		61.8
(1.5)
A 		72.9
(3)
A 		50.7
(-0.1)
A 		29.7
(-3)
P 		43
C 78.6
(3)
P 		61.8
(1.2)
A 		70.8
(2.2)
A 		70.3
(2.1)
M 		23.5
(-3)
A 		33.5
(-1.9)
A 		55
avr 85.2
(3) 		44.5
(-3) 		64.8
(0) 		72.6
(1.2) 		44.3
(-3) 		46.4
(-2.7) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.2
(1.5)
P 		23
(3)
P 		18.1
(-1.1)
P 		15.9
(-3)
A 		7
B 15.5
(-0.8)
P 		22.6
(3)
P 		11.3
(-3)
A 		14.2
(-1.5)
A 		11
C 13.2
(-1.8)
A 		29.8
(3)
A 		19.9
(0.1)
P 		9.2
(-3)
A 		21
avr 16.6
(-1.3) 		25.1
(3) 		16.4
(-1.4) 		13.1
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 19.8
(3)
A 		14.3
(-2.2)
A 		13.5
(-3)
A 		18.9
(2.1)
M 		17.7
(1)
A 		18.5
(1.8)
A 		6
B 24.2
(3)
P 		10.5
(-3)
A 		15
(-1)
A 		19.3
(0.9)
A 		20.6
(1.4)
A 		11.1
(-2.7)
P 		14
C 29.1
(3)
P 		18.8
(0.1)
A 		18
(-0.1)
A 		14.1
(-1.2)
M 		7.6
(-3)
A 		11.2
(-2)
A 		22
avr 24.4
(3) 		14.5
(-2.5) 		15.5
(-1.9) 		17.4
(-0.9) 		15.3
(-2.1) 		13.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181228_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11085
Sequence Type Exemplar sequence
Representative Public ID F15E6.5 NCBI
Target Description F15E6.5 /REP_DB=WormBase Gene ID /WP=CE16994 /TR=O44493 /GB=AAB92057.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068132(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068132 NCBI Caenorhabditis elegans F15E6.5 (F15E6.5) mRNA, complete cds. 11/11 None
SNAP00000035362 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4289560:4290054:1 11/11 None
F15E6.5 ENSEMBL cdna:known chromosome:CEL140:IV:4289560:4290054:1 gene:F15E6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4289565-4290060(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15E6.5
Entrez Gene 184534 Entrez gene
SwissProt O44493 EMBL-EBI
WormBase CE16994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500533 F15E6.5 [Caenorhabditis elegans] gb|AAB92057.1| Hypothetical protein F15E6.5 [Caenorhabditis elegans] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:181228_AT
aaatgctgagcaaatcgtctttaaagggtatccattacccgacaattcaattcaaactta
tcaagaagttcaagaaacctttcaacacaatcttaaaattcttgaaatcccatccaacta
tcctctaactcttaatgatttattgatcatcaattgttgtattttacgagtcaaatgcat
actgactccaaacgtactgaacttattcataaagcactggatgaacgggtccaacccttt
attgaaacatttttcggcgagaatatcaacagaactaaaccgccatctacgaccattcat
aaatagactactagctggtttgaaatatgagacgacagttctagagtttgaattgaatgc
ccaagaaaatattgcagctcaagaagtttatgtagttcagggaaacgaagaaactctagc
gattataacattctctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCTGAGCAAATCGTCTTTAAA 691 119 24 Antisense
TTACCCGACAATTCAATTCAAACTT 457 681 58 Antisense
TCTTGAAATCCCATCCAACTATCCT 20 617 123 Antisense
TCCAACTATCCTCTAACTCTTAATG 701 585 136 Antisense
AATGCATACTGACTCCAAACGTACT 662 165 197 Antisense
GACTCCAAACGTACTGAACTTATTC 235 365 207 Antisense
GATGAACGGGTCCAACCCTTTATTG 636 361 243 Antisense
AACAGAACTAAACCGCCATCTACGA 534 133 291 Antisense
CGCCATCTACGACCATTCATAAATA 466 257 304 Antisense
GACTACTAGCTGGTTTGAAATATGA 531 371 329 Antisense
TCTAGCGATTATAACATTCTCTGAT 463 613 438 Antisense
Sequence Source Affymetrix Proprietary Database