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[181227_at]

Description F07A11.1 /REP_DB=WormBase Gene ID /WP=CE03143 /TR=Q19129 /GB=CAA91314.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4.1
(-3)
A 		43.8
(3)
A 		13.2
(-1.6)
A 		25.4
(0.2)
A 		40
B 49.9
(3)
A 		9.6
(-2.9)
A 		12.7
(-2.5)
A 		9.2
(-3)
A 		41
C 42.8
(3)
A 		24.8
(0.2)
A 		12.9
(-1.6)
A 		4.2
(-3)
A 		39
avr 32.3
(3) 		26.1
(1.1) 		12.9
(-3) 		12.9
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 15.3
(-1.3)
A 		40.2
(2.2)
A 		46.3
(3)
A 		3.2
(-3)
A 		7.4
(-2.4)
A 		5.8
(-2.6)
A 		43
B 17.8
(-2)
A 		7.6
(-3)
A 		69.1
(3)
A 		42.4
(0.4)
A 		9.1
(-2.9)
A 		37.2
(-0.1)
A 		62
C 42.2
(2.6)
A 		11.7
(-2.4)
A 		44.8
(3)
A 		18.9
(-1.2)
A 		7.8
(-3)
A 		11.2
(-2.4)
A 		37
avr 25.1
(-0.7) 		19.8
(-1.5) 		53.4
(3) 		21.5
(-1.2) 		8.1
(-3) 		18.1
(-1.7) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.5
(-3)
A 		9.5
(3)
A 		3.5
(-1.5)
A 		3.7
(-1.4)
A 		8
B 15.9
(3)
A 		2.4
(-2.8)
A 		2.9
(-2.6)
A 		2
(-3)
A 		14
C 14.2
(3)
A 		7.1
(-0.2)
A 		4.5
(-1.3)
A 		0.7
(-3)
A 		14
avr 10.5
(3) 		6.3
(-0) 		3.6
(-1.9) 		2.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.8
(-2.1)
A 		14.3
(3)
A 		10.1
(1.1)
A 		0.8
(-3)
A 		2.2
(-2.4)
A 		1.4
(-2.7)
A 		14
B 6.2
(-1.4)
A 		2.5
(-3)
A 		16.8
(3)
A 		11.2
(0.7)
A 		3.7
(-2.5)
A 		13.9
(1.8)
A 		14
C 15.6
(3)
A 		3.6
(-2.5)
A 		11.4
(1.1)
A 		3.8
(-2.4)
A 		2.5
(-3)
A 		3.7
(-2.5)
A 		13
avr 8.2
(0.2) 		6.8
(-0.6) 		12.8
(3) 		5.3
(-1.5) 		2.8
(-3) 		6.3
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181227_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3544
Sequence Type Exemplar sequence
Representative Public ID F07A11.1 NCBI
Target Description F07A11.1 /REP_DB=WormBase Gene ID /WP=CE03143 /TR=Q19129 /GB=CAA91314.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064077(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064077 NCBI Caenorhabditis elegans F07A11.1 (F07A11.1) mRNA, complete cds. 11/11 None
SNAP00000044549 ENSEMBL cdna:SNAP chromosome:CEL140:II:11586495:11589300:-1 10/11 None
GENEFINDER00000044565 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11588390:11591963:-1 11/11 None
F07A11.1 ENSEMBL cdna:known chromosome:CEL140:II:11588427:11591404:-1 gene:F07A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11588423-11591401(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07A11.1
Entrez Gene 184110 Entrez gene
SwissProt Q19129 EMBL-EBI
WormBase CE03143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91314 Hypothetical protein F07A11.1 [Caenorhabditis elegans] ref|NP_496478.1| F07A11.1 [Caenorhabditis elegans] 0.0
blast CAE59467 Hypothetical protein CBG02851 [Caenorhabditis briggsae] 0.0
blast CAA91314 Hypothetical protein F07A11.1 [Caenorhabditis elegans] ref|NP_496478.1| F07A11.1 [Caenorhabditis elegans] 6.0E-93
blast CAE59467 Hypothetical protein CBG02851 [Caenorhabditis briggsae] 1.0E-87
Sequence
Target Sequence 
>C. ELEGANS:181227_AT
agagtcggtgctccgtcggataaaaattggttgtggtgggctgagagaccagatgaacat
ggatggagagatgctcgattgaaggggttaaaacatacaaatcaagttgaaaggaatcag
actttcaaacaatcaattggaatgctggaagaatttaaagctcgtcaagctcatgatgat
atggtgatgagagataatcgaagagcaaaatatgataaattgagagatcagttgcatgaa
aattcgaaaatgttgtacccattgaccaaaactgaaagccgtccgataattgttcaaccg
gatcctagagttgaagctgcctggcgagaagctcatgagaaatacgatcgaaagtttgca
gttttacaggataacgctatgaagagcatttctggagcagcattagatggagttgcccat
gctaccacctcctgtcgtcgttgtgctcggtgtgctcggcccatggaacggaagaccacc
ctgtttgttaatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTCGGTGCTCCGTCGGATAAAA 196 69 1090 Antisense
AAATTGGTTGTGGTGGGCTGAGAGA 488 115 1113 Antisense
AGCTCGTCAAGCTCATGATGATATG 289 81 1248 Antisense
ATGTTGTACCCATTGACCAAAACTG 302 45 1339 Antisense
AAGCCGTCCGATAATTGTTCAACCG 381 147 1365 Antisense
GATCCTAGAGTTGAAGCTGCCTGGC 555 415 1390 Antisense
GCTGCCTGGCGAGAAGCTCATGAGA 543 297 1405 Antisense
GAAGAGCATTTCTGGAGCAGCATTA 390 339 1470 Antisense
TAGATGGAGTTGCCCATGCTACCAC 519 653 1493 Antisense
TGCTCGGCCCATGGAACGGAAGACC 69 581 1542 Antisense
GAAGACCACCCTGTTTGTTAATCGT 311 335 1560 Antisense
Sequence Source Affymetrix Proprietary Database