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[181226_at]

Description C39B10.4 /REP_DB=WormBase Gene ID /WP=CE02159 /TR=Q18519 /GB=CAA90333.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 21.1
(-0.3)
A 		14.8
(-1.1)
A 		1.3
(-3)
A 		44.9
(3)
A 		44
B 10.6
(1.9)
A 		1.6
(-3)
A 		12.7
(3)
A 		11.6
(2.4)
A 		11
C 16.8
(-1.6)
A 		21.9
(-1.1)
A 		2.4
(-3)
A 		63.9
(3)
P 		62
avr 16.2
(-1.1) 		12.8
(-1.7) 		5.5
(-3) 		40.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 32.5
(3)
A 		1.3
(-3)
A 		24.3
(1.4)
A 		24.6
(1.5)
A 		11.7
(-1)
A 		2.1
(-2.8)
A 		31
B 27.3
(0.5)
A 		25.4
(0.1)
A 		39.4
(3)
A 		33.4
(1.7)
A 		14.3
(-2.2)
A 		10.7
(-3)
A 		29
C 1.3
(-3)
A 		4.3
(-2)
A 		20.1
(3)
A 		8
(-0.9)
A 		1.5
(-2.9)
A 		2.2
(-2.7)
A 		19
avr 20.4
(1) 		10.3
(-1.6) 		27.9
(3) 		22
(1.5) 		9.2
(-1.9) 		5
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.7
(3)
A 		3.2
(-0.6)
A 		0.3
(-3)
A 		6.6
(2.1)
A 		7
B 3.4
(3)
A 		0.4
(-3)
A 		2.9
(2)
A 		2.5
(1.2)
A 		3
C 5.6
(-0.1)
A 		6.3
(0.3)
A 		0.8
(-3)
A 		10.8
(3)
P 		10
avr 5.6
(1.9) 		3.3
(-0.7) 		1.3
(-3) 		6.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6
(2.8)
A 		0.5
(-3)
A 		5.3
(2.1)
A 		6.2
(3)
A 		3.5
(0.2)
A 		0.5
(-3)
A 		6
B 9.5
(2.9)
A 		8.4
(1.7)
A 		9.6
(3)
A 		8.9
(2.3)
A 		5.8
(-1.1)
A 		4
(-3)
A 		6
C 0.5
(-3)
A 		1.3
(-2)
A 		5.1
(3)
A 		1.6
(-1.6)
A 		0.5
(-3)
A 		0.7
(-2.7)
A 		5
avr 5.3
(1.3) 		3.4
(-1) 		6.7
(3) 		5.6
(1.7) 		3.3
(-1.1) 		1.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16200
Sequence Type Exemplar sequence
Representative Public ID C39B10.4 NCBI
Target Description C39B10.4 /REP_DB=WormBase Gene ID /WP=CE02159 /TR=Q18519 /GB=CAA90333.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077350 NCBI Caenorhabditis elegans C39B10.4 (C39B10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000006458 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10444933:10445924:1 10/11 None
C39B10.4 ENSEMBL cdna:known chromosome:CEL140:X:10444933:10445924:1 gene:C39B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10444932-10445924(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B10.4
Entrez Gene 183333 Entrez gene
SwissProt Q18519 EMBL-EBI
WormBase CE02159 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90333 Hypothetical protein C39B10.4 [Caenorhabditis elegans] ref|NP_509751.1| C39B10.4 [Caenorhabditis elegans] 1.0E-104
blast CAA90333 Hypothetical protein C39B10.4 [Caenorhabditis elegans] ref|NP_509751.1| C39B10.4 [Caenorhabditis elegans] 6.0E-91
Sequence
Target Sequence 
>C. ELEGANS:181226_AT
atgtcttctgatcaggtgctggacgaagcttctctgaaggaacttgtagacagaaacgcc
gttttgatacaagaacaaactgagtttatccaaaatcagacgatcacaaaatacaactta
gcaagtacgctagaattccagaaacgaaggttgagcttgtactctgatactattcacctt
aaaagtggatgtctttcacaaaggaaagatcagattggtaaagagcaaaacacaatcagt
accatgaaaaactctattgaggctcgaaaccaacgttctaccgatggaatgcaaagttct
ggtggaaaaagttcgagtgaacttgctttcgtgatcgaggtatatgaaccgaacaaagac
tgcagagagccatgttcaaacgagatacatttttttcacacaattcttattaatttagca
gtagatcttgaagtatgtaaaaagtatgcggaatgcattctaaaaacttcggaatttttg
gacgccaagtgtttatctatatgctcatttttagctcactcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTCTGATCAGGTGCTGGACG 462 47 13 Antisense
GGTGCTGGACGAAGCTTCTCTGAAG 406 501 27 Antisense
ACTTGTAGACAGAAACGCCGTTTTG 638 1 54 Antisense
GCAAGTACGCTAGAATTCCAGAAAC 577 319 133 Antisense
GCTTGTACTCTGATACTATTCACCT 297 307 167 Antisense
GCTCGAAACCAACGTTCTACCGATG 570 283 274 Antisense
GAGTGAACTTGCTTTCGTGATCGAG 330 401 327 Antisense
GACTGCAGAGAGCCATGTTCAAACG 528 375 370 Antisense
AACGAGATACATTTTTTTCACACAA 255 145 391 Antisense
GGACGCCAAGTGTTTATCTATATGC 342 523 492 Antisense
TATGCTCATTTTTAGCTCACTCGAT 614 657 512 Antisense
Sequence Source Affymetrix Proprietary Database