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[181224_at]

Description D1009.5 /REP_DB=WormBase Gene ID /WP=CE04289 /TR=Q18917 /GB=AAA81699.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 13      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 7.3
(0.7)
A 		8.3
(3)
A 		5.7
(-3)
A 		8.2
(2.8)
A 		3
B 8.8
(3)
A 		6.8
(0.9)
A 		5.8
(-0.2)
A 		3.2
(-3)
A 		6
C 20.6
(-0)
A 		6.9
(-2.6)
A 		5
(-3)
A 		36.6
(3)
A 		32
avr 12.2
(0.8) 		7.3
(-2) 		5.5
(-3) 		16
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 5.1
(-1.1)
A 		4.8
(-1.3)
A 		9.1
(2.4)
A 		3.3
(-2.7)
A 		9.8
(3)
A 		2.9
(-3)
A 		7
B 8.8
(3)
A 		5
(-1.1)
A 		6.7
(0.7)
A 		8
(2.1)
A 		3.7
(-2.6)
A 		3.3
(-3)
A 		6
C 25
(1.4)
A 		32.8
(3)
A 		7.1
(-2.3)
A 		11.5
(-1.4)
A 		3.7
(-3)
A 		6.9
(-2.3)
A 		29
avr 13
(2.3) 		14.2
(3) 		7.6
(-1) 		7.6
(-1) 		5.7
(-2.2) 		4.4
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.7
(3)
A 		1.8
(-0.6)
A 		1.5
(-1.8)
A 		1.2
(-3)
A 		2
B 2.8
(3)
A 		1.7
(-0.1)
A 		1.3
(-1.3)
A 		0.7
(-3)
A 		2
C 6.8
(3)
A 		2
(-2.6)
A 		1.7
(-3)
A 		6.2
(2.3)
A 		5
avr 4.1
(3) 		1.8
(-2.3) 		1.5
(-3) 		2.7
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-2.5)
A 		1.7
(-0.3)
A 		2
(0.5)
A 		0.8
(-2.7)
A 		2.9
(3)
A 		0.7
(-3)
A 		2
B 3.1
(3)
A 		1.7
(-1.4)
A 		1.6
(-1.7)
A 		2.1
(-0.2)
A 		1.5
(-2.1)
A 		1.2
(-3)
A 		2
C 9.3
(2.5)
A 		10
(3)
A 		1.8
(-2.6)
A 		2.3
(-2.3)
A 		1.2
(-3)
A 		2.3
(-2.3)
A 		9
avr 4.4
(2.8) 		4.5
(3) 		1.8
(-2.2) 		1.7
(-2.4) 		1.9
(-2) 		1.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16307
Sequence Type Exemplar sequence
Representative Public ID D1009.5 NCBI
Target Description D1009.5 /REP_DB=WormBase Gene ID /WP=CE04289 /TR=Q18917 /GB=AAA81699.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077110 NCBI Caenorhabditis elegans DYnein Light chain (Tctex type] family member (dylt-2) (dylt-2) mRNA, complete cds. 11/11 None
SNAP00000025063 ENSEMBL cdna:SNAP chromosome:CEL140:X:8939579:8940118:-1 10/11 None
GENEFINDER00000025068 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8939579:8940079:-1 10/11 None
D1009.5 ENSEMBL cdna:known chromosome:CEL140:X:8939325:8940079:-1 gene:D1009.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8939323-8940078(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dylt-2
Ensembl D1009.5
Entrez Gene 183892 Entrez gene
SwissProt Q18917 EMBL-EBI
WormBase CE04289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81699 Hypothetical protein D1009.5 [Caenorhabditis elegans] ref|NP_509511.1| DYnein Light chain (Tctex type] family member (dylt-2) [Caenorhabditis elegans] 7.0E-67
blast AAA81699 Hypothetical protein D1009.5 [Caenorhabditis elegans] ref|NP_509511.1| DYnein Light chain (Tctex type] family member (dylt-2) [Caenorhabditis elegans] 6.0E-57
blast CAE57318 Hypothetical protein CBG00241 [Caenorhabditis briggsae] 3.0E-36
blast CAE57318 Hypothetical protein CBG00241 [Caenorhabditis briggsae] 2.0E-35
blast NP_079605 hypothetical protein LOC66061 [Mus musculus] gb|AAH59716.1| RIKEN cDNA 0610012D17 [Mus musculus] dbj|BAB26652.1| unnamed protein product [Mus musculus] dbj|BAB22210.1| unnamed protein product [Mus musculus] dbj|BAB24886.1| unnamed protein product [Mus musculus] 5.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR005334 EMBL-EBI Tctex-1 family 1.5E-10
Pfam IPR005334 EMBL-EBI Tctex-1 family 3.5E-7
Pfam IPR005334 EMBL-EBI Tctex-1 family 3.5E-7
Sequence
Target Sequence 
>C. ELEGANS:181224_AT
gccaacgatcgtaattttgttctcagaccaactcctggccagaaatttcgcccaaaagct
gtagctggaatgattcaagagattcttggagaaaagctgggggcattaaccatttataat
gttgatgaagctgaacttgtttcaaaagatatatcagcatcaatcagagaacgacttaaa
gggcttcaacttccgcgatacaaatatgttattcaaaccatgattgcggaacaatgtggg
aacggagcaacaaccgctgttcagtgcgtttgggacgaagattgcgatgggtatttgacc
caaagatatgtcactggctccattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAACGATCGTAATTTTGTTCTCA 175 279 22 Antisense
ATTTTGTTCTCAGACCAACTCCTGG 30 15 35 Antisense
AACTCCTGGCCAGAAATTTCGCCCA 14 139 51 Antisense
AAATTTCGCCCAAAAGCTGTAGCTG 563 113 64 Antisense
AAAGCTGGGGGCATTAACCATTTAT 392 71 114 Antisense
TATCAGCATCAATCAGAGAACGACT 215 659 173 Antisense
GAGAACGACTTAAAGGGCTTCAACT 380 389 188 Antisense
GCTTCAACTTCCGCGATACAAATAT 512 305 204 Antisense
GGAACGGAGCAACAACCGCTGTTCA 649 529 260 Antisense
ACCGCTGTTCAGTGCGTTTGGGACG 626 89 274 Antisense
CAAAGATATGTCACTGGCTCCATTT 266 193 322 Antisense
Sequence Source Affymetrix Proprietary Database