[Home] | [Total List]

[181222_s_at]

Description ZK721.1 /REP_DB=WormBase Gene ID /WP=CE26397 /TR=Q9GYF0 /GB=AAG01568.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 70      4grp_total > 07      6grp_cgc > 95      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 69.1
(3)
P 		38.2
(-3)
A 		47.1
(-1.3)
A 		68
(2.8)
A 		31
B 118.2
(3)
P 		13.7
(-3)
A 		82.5
(1)
A 		74.6
(0.5)
A 		105
C 59.4
(3)
P 		30.8
(-3)
A 		47.6
(0.5)
A 		34.8
(-2.2)
A 		29
avr 82.2
(3) 		27.6
(-3) 		59.1
(0.5) 		59.1
(0.5) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 111.7
(0)
A 		78.6
(-3)
P 		103.5
(-0.7)
P 		144.4
(3)
P 		125.5
(1.3)
P 		109.9
(-0.1)
P 		66
B 104.8
(0.1)
P 		140.2
(3)
P 		104.8
(0.1)
P 		125.1
(1.7)
P 		68.1
(-3)
P 		86.4
(-1.5)
P 		72
C 66.2
(-3)
M 		100.8
(-0.1)
P 		101.2
(-0.1)
P 		137.6
(3)
P 		69.3
(-2.7)
P 		89.5
(-1)
M 		71
avr 94.2
(-2.2) 		106.5
(-0.6) 		103.2
(-1.1) 		135.7
(3) 		87.6
(-3) 		95.3
(-2) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 25.2
(3)
P 		8.3
(-3)
A 		12.3
(-1.6)
A 		10
(-2.4)
A 		17
B 37.7
(3)
P 		3.4
(-3)
A 		19.1
(-0.3)
A 		15.9
(-0.8)
A 		34
C 19.7
(3)
P 		8.8
(-1.7)
A 		16.6
(1.7)
A 		5.9
(-3)
A 		14
avr 27.5
(3) 		6.8
(-3) 		16
(-0.3) 		10.6
(-1.9) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 20.6
(-3)
A 		28
(-0.4)
P 		22.5
(-2.3)
P 		36.6
(2.5)
P 		37.9
(3)
P 		26.8
(-0.8)
P 		17
B 36.5
(0.1)
P 		46.7
(3)
P 		25.4
(-3)
P 		33.1
(-0.8)
P 		27.7
(-2.4)
P 		32.2
(-1.1)
P 		21
C 24.5
(-1.5)
M 		30.7
(3)
P 		25.7
(-0.6)
P 		27.7
(0.8)
P 		22.4
(-3)
P 		30
(2.5)
M 		8
avr 27.2
(-1.5) 		35.1
(3) 		24.5
(-3) 		32.5
(1.5) 		29.3
(-0.3) 		29.7
(-0.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181222_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16015
Sequence Type Exemplar sequence
Representative Public ID ZK721.1 NCBI
Target Description ZK721.1 /REP_DB=WormBase Gene ID /WP=CE26397 /TR=Q9GYF0 /GB=AAG01568.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077088 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-130) (tag-130) mRNA, complete cds. 11/11 None
SNAP00000036363 ENSEMBL cdna:SNAP chromosome:CEL140:X:8793630:8795776:1 11/11 None
GENEFINDER00000036371 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8793674:8795776:1 11/11 None
ZK721.1 ENSEMBL cdna:known chromosome:CEL140:X:8792097:8796025:1 gene:ZK721.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8792100-8795775(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-130
Ensembl ZK721.1
Entrez Gene 181125 Entrez gene
SwissProt Q9GYF0 EMBL-EBI
WormBase CE26397 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20886.1.S1_AT similar to SID1 transmembrane family, member 2 cfa
CANINE_2:CFA.20886.2.S1_S_AT similar to SID1 transmembrane family, member 2 cfa
CANINE_2:CFA.21475.1.S1_AT similar to SID1 transmembrane family, member 2 cfa
HG-U133_PLUS_2:218765_AT SID1 transmembrane family, member 2 hs
HG-U133A:218765_AT SID1 transmembrane family, member 2 hs
HG-U133A_2:218765_AT SID1 transmembrane family, member 2 hs
HU35KSUBA:RC_AA609346_AT SID1 transmembrane family, member 2 hs
HU35KSUBD:RC_R08139_S_AT SID1 transmembrane family, member 2 hs
U133_X3P:G7705756_3P_S_AT SID1 transmembrane family, member 2 hs
HG-U133A_2:56256_AT SID1 transmembrane family, member 2 hs
HG-U133_PLUS_2:56256_AT SID1 transmembrane family, member 2 hs
HG-U133A:56256_AT SID1 transmembrane family, member 2 hs
HG-U95B:56256_AT SID1 transmembrane family, member 2 hs
HG-U95C:62300_AT SID1 transmembrane family, member 2 hs
HG-U95D:75163_AT SID1 transmembrane family, member 2 hs
HG-U95E:87088_AT SID1 transmembrane family, member 2 hs
HG-U133_PLUS_2:232248_AT SID1 transmembrane family, member 2 hs
HG-U133B:232248_AT SID1 transmembrane family, member 2 hs
HU35KSUBA:RC_AA054715_AT SID1 transmembrane family, member 2 hs
U133_X3P:HS.33724.0.S1_3P_AT SID1 transmembrane family, member 2 hs
HG-U95B:50922_AT SID1 transmembrane family, member 2 hs
HG-U95E:87089_AT SID1 transmembrane family, member 2 hs
HG-U95E:87090_G_AT SID1 transmembrane family, member 2 hs
HG-U95E:89433_AT SID1 transmembrane family, member 2 hs
MU11KSUBA:AA271939_S_AT SID1 transmembrane family, member 2 mm
MG-U74AV2:95023_AT SID1 transmembrane family, member 2 mm
MOE430A:1426940_AT SID1 transmembrane family, member 2 mm
MOUSE430A_2:1426940_AT SID1 transmembrane family, member 2 mm
MOUSE430_2:1426940_AT SID1 transmembrane family, member 2 mm
RG-U34B:RC_AA956733_AT hypothetical LOC315617 (predicted) rn
RAE230A:1388828_AT hypothetical LOC315617 (predicted) rn
RAT230_2:1388828_AT hypothetical LOC315617 (predicted) rn
RG-U34C:RC_AA858989_AT Hypothetical LOC315617 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAG01568 Temporarily assigned gene name protein 130 [Caenorhabditis elegans] ref|NP_509489.1| Temporarily Assigned Gene name family member (tag-130) [Caenorhabditis elegans] 0.0
blast CAE69358 Hypothetical protein CBG15447 [Caenorhabditis briggsae] 0.0
blast T27986 hypothetical protein ZK721.1 - Caenorhabditis elegans 1.0E-135
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509489.1 9 271-293,373-395,422-444,528-550,555-577,611-633,638-660,673-690,722-741
ZK721.1 9 271-293,373-395,422-444,528-550,555-577,611-633,638-660,673-690,722-741
SNAP00000036363 8 62-84,111-133,217-239,244-266,300-322,327-349,362-379,411-430
GENEFINDER00000036371 8 47-69,96-118,202-224,229-251,285-307,312-334,347-364,396-415
Sequence
Target Sequence 
>C. ELEGANS:181222_S_AT
gattttctgggctttgttttcaattatctacatcgccagtatgcttcttgtcagcctcga
gttctatttcaaaggaatctggacattaaatttacgagagctgcgaaactccataaggct
ttcttgggtatcatcaagacatttgtcgtgtgtagttccagcttacaaggctcggttctt
tgttattcttcttctcaatatagcaaacactgcagtagtggtttatggacttgaagccca
cccaaaagattttctctcgtttcttctaattccattcatcgggaatttgtttatctacat
aatttactacattctaatgaagatgatctaccgagagaaaattccaaaaagagccatcgc
tcttctttttgctgctgtcatttcctggacttgtgccggaattttattcaaccaacgtgt
atctgattggagcaaaatgccagcaatatcccgagaactcaacaaaccatgcatattttt
gaacttttacgataaccacgatttgtggcacctttcttctgcttttgccattttcttctc
tttcaccgccatcaatgtaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTCTGGGCTTTGTTTTCAATT 408 429 1674 Antisense
TACATCGCCAGTATGCTTCTTGTCA 268 645 1702 Antisense
TGTCAGCCTCGAGTTCTATTTCAAA 123 559 1722 Antisense
CATTTGTCGTGTGTAGTTCCAGCTT 598 213 1813 Antisense
GTTCCAGCTTACAAGGCTCGGTTCT 18 439 1828 Antisense
GCCCACCCAAAAGATTTTCTCTCGT 220 285 1909 Antisense
TCGTTTCTTCTAATTCCATTCATCG 181 605 1930 Antisense
AAGAGCCATCGCTCTTCTTTTTGCT 50 155 2022 Antisense
TGCTGTCATTTCCTGGACTTGTGCC 341 583 2046 Antisense
ACCACGATTTGTGGCACCTTTCTTC 308 85 2168 Antisense
CTCTTTCACCGCCATCAATGTAATT 483 229 2211 Antisense
Sequence Source Affymetrix Proprietary Database