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[181221_s_at]

Description F48E8.7 /REP_DB=WormBase Gene ID /WP=CE28404 /TR=Q09397 /GB=AAC46542.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 139.8
(-3)
A 		333
(1.4)
A 		404.5
(3)
A 		316
(1)
A 		265
B 181.8
(-3)
A 		346.1
(2.6)
A 		356.7
(3)
A 		346.1
(2.6)
A 		175
C 132.3
(-3)
A 		306.1
(1.1)
A 		382.6
(3)
A 		383.7
(3)
A 		251
avr 151.3
(-3) 		328.4
(1.6) 		381.3
(3) 		348.6
(2.1) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1303
1 2 3 4 5 6 range
A 226.9
(-3)
A 		230.3
(-3)
A 		257.4
(-2.8)
A 		485.5
(-1.5)
P 		1238.4
(3)
P 		1240
(3)
P 		1013
B 256.9
(-2.8)
A 		213.2
(-3)
A 		262.6
(-2.8)
A 		507.5
(-1.6)
P 		1018.4
(0.9)
P 		1444.9
(3)
P 		1232
C 210
(-2.8)
A 		173.1
(-3)
A 		324.2
(-2.3)
A 		523.6
(-1.4)
P 		964.4
(0.6)
P 		1475.9
(3)
P 		1303
avr 231.3
(-2.9) 		205.5
(-3) 		281.4
(-2.6) 		505.5
(-1.5) 		1073.7
(1.4) 		1386.9
(3) 		1181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 50.9
(-2.5)
A 		72.3
(-0.4)
A 		105.7
(3)
A 		46.3
(-3)
A 		59
B 58
(-3)
A 		85.5
(3)
A 		82.6
(2.4)
A 		73.7
(0.4)
A 		28
C 43.8
(-3)
A 		88
(-0)
A 		133.3
(3)
A 		64.7
(-1.6)
A 		90
avr 50.9
(-3) 		81.9
(0.3) 		107.2
(3) 		61.6
(-1.9) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 41.8
(-3)
A 		81.9
(-2.3)
A 		56.1
(-2.7)
A 		123.1
(-1.5)
P 		373.7
(3)
P 		301.9
(1.7)
P 		332
B 89.4
(-2.7)
A 		71
(-2.9)
A 		63.8
(-3)
A 		134.4
(-2.1)
P 		413.8
(1.4)
P 		538.8
(3)
P 		475
C 77.8
(-2.7)
A 		52.8
(-3)
A 		82.5
(-2.6)
A 		105.3
(-2.3)
P 		312.1
(0.5)
P 		494.1
(3)
P 		441
avr 69.7
(-3) 		68.6
(-3) 		67.5
(-3) 		120.9
(-2.2) 		366.5
(1.8) 		444.9
(3) 		377
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181221_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7281
Sequence Type Exemplar sequence
Representative Public ID F48E8.7 NCBI
Target Description F48E8.7 /REP_DB=WormBase Gene ID /WP=CE28404 /TR=Q09397 /GB=AAC46542.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171865(11), NM_171121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171865 NCBI Caenorhabditis elegans F48E8.7a (F48E8.7) mRNA, complete cds. 11/11 None
NM_171121 NCBI Caenorhabditis elegans F48E8.7b (F48E8.7) mRNA, complete cds. 11/11 None
SNAP00000003638 ENSEMBL cdna:SNAP chromosome:CEL140:III:5446591:5448198:-1 11/11 None
GENEFINDER00000003654 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5446591:5448198:-1 11/11 None
F48E8.7a ENSEMBL cdna:known chromosome:CEL140:III:5446477:5448277:-1 gene:F48E8.7 11/11 None
F48E8.7b ENSEMBL cdna:known chromosome:CEL140:III:5446591:5448350:-1 gene:F48E8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5446589-5448197(-) 100.0 100.0
Public Domain and Genome References
Ensembl F48E8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46542 Hypothetical protein F48E8.7a [Caenorhabditis elegans] ref|NP_741137.1| F48E8.7a [Caenorhabditis elegans] 0.0
blast AAM48532 Hypothetical protein F48E8.7b [Caenorhabditis elegans] ref|NP_741136.1| F48E8.7b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.9E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.9E-6
Sequence
Target Sequence 
>C. ELEGANS:181221_S_AT
gcattgcagagaatcgcgggctccgcgagctcgacatctcgatgaccaacggaatcacgg
caaatggagccagtttgatcttcagaaattgcaaagacctgcaacaactgaatctggcgt
ggtgtggattaacacagccaattgtgaccgtaatcattcattccattggcgagaagctca
aaaagttgaatctctcgggaacagttcgaaacttcggcatcaacaataaacatattgaga
ttctcgccgcaaaatccaactacgtcaccgacctcgacttgtcggataacgtcgagatta
gtgatccaggcctcgcagtgattctgaacaaattcccgagacttacgacaatttctctca
atcgatgctacggattggaccctaatatggttgtacacttcaacagtaagccttcgctcg
tttatctcaacgttcatggctgcgtctctgacacgaacatggagcttttcctcgaaatgt
gctccaatctgaaggtcaaccgtcagtacttcaacttcaccgccaaaccggtcagctacc
aatgcgagtcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGCAGAGAATCGCGGGCTCCG 575 307 680 Antisense
TCCGCGAGCTCGACATCTCGATGAC 80 597 701 Antisense
TTCTCGCCGCAAAATCCAACTACGT 530 693 920 Antisense
GTCACCGACCTCGACTTGTCGGATA 325 463 943 Antisense
GACAATTTCTCTCAATCGATGCTAC 161 365 1026 Antisense
CGATGCTACGGATTGGACCCTAATA 207 241 1042 Antisense
AACAGTAAGCCTTCGCTCGTTTATC 67 135 1081 Antisense
GTTTATCTCAACGTTCATGGCTGCG 423 449 1099 Antisense
GCTGCGTCTCTGACACGAACATGGA 108 297 1118 Antisense
GTCAACCGTCAGTACTTCAACTTCA 209 463 1174 Antisense
GGTCAGCTACCAATGCGAGTCGAAT 168 503 1209 Antisense
Sequence Source Affymetrix Proprietary Database