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[181220_at]

Description C53B7.2 /REP_DB=WormBase Gene ID /WP=CE06972 /TR=Q18805 /GB=AAC48275.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 123.7
(3)
A 		79.2
(-0.4)
A 		45.2
(-3)
A 		112.7
(2.2)
A 		79
B 97.4
(-0.2)
A 		149.7
(3)
A 		81.8
(-1.1)
A 		50.6
(-3)
A 		99
C 128.3
(3)
A 		113.1
(0.5)
A 		92.1
(-3)
A 		109.8
(-0.1)
A 		36
avr 116.5
(3) 		114
(2.7) 		73
(-3) 		91
(-0.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 170.8
(0.9)
A 		91
(-1.6)
A 		110
(-1)
A 		46.7
(-3)
A 		239.7
(3)
P 		88.9
(-1.7)
A 		193
B 65.5
(-2)
A 		36.1
(-3)
A 		104.6
(-0.6)
A 		84.4
(-1.3)
A 		207.6
(3)
P 		86.3
(-1.2)
A 		172
C 112.8
(-1)
A 		54
(-3)
A 		93.3
(-1.7)
A 		127.1
(-0.5)
A 		231
(3)
P 		99.6
(-1.5)
A 		177
avr 116.4
(-1) 		60.4
(-3) 		102.6
(-1.5) 		86.1
(-2.1) 		226.1
(3) 		91.6
(-1.9) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 45
(3)
A 		17.2
(-2)
A 		11.8
(-3)
A 		16.5
(-2.2)
A 		33
B 31.1
(1.6)
A 		37
(3)
A 		19
(-1.1)
A 		10.8
(-3)
A 		26
C 42.5
(3)
A 		32.5
(0.5)
A 		32.1
(0.4)
A 		18.5
(-3)
A 		24
avr 39.5
(3) 		28.9
(0.4) 		21
(-1.6) 		15.3
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 31.5
(-1.1)
A 		32.4
(-1)
A 		24
(-1.8)
A 		11.9
(-3)
A 		72.3
(3)
P 		21.6
(-2)
A 		60
B 22.8
(-2.1)
A 		12
(-3)
A 		25.4
(-1.9)
A 		22.4
(-2.1)
A 		84.4
(3)
P 		32.2
(-1.3)
A 		72
C 41.8
(-0.4)
A 		16.5
(-3)
A 		23.7
(-2.3)
A 		25.6
(-2.1)
A 		74.7
(3)
P 		33.3
(-1.3)
A 		58
avr 32
(-1.7) 		20.3
(-3) 		24.4
(-2.5) 		20
(-3) 		77.1
(3) 		29
(-2.1) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16317
Sequence Type Exemplar sequence
Representative Public ID C53B7.2 NCBI
Target Description C53B7.2 /REP_DB=WormBase Gene ID /WP=CE06972 /TR=Q18805 /GB=AAC48275.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076753(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076753 NCBI Caenorhabditis elegans C53B7.2 (C53B7.2) mRNA, complete cds. 11/11 None
SNAP00000013979 ENSEMBL cdna:SNAP chromosome:CEL140:X:6846053:6847346:1 11/11 None
GENEFINDER00000013985 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6846203:6847346:1 10/11 None
C53B7.2 ENSEMBL cdna:known chromosome:CEL140:X:6846203:6847530:1 gene:C53B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6846202-6847530(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53B7.2
Entrez Gene 183744 Entrez gene
SwissProt Q18805 EMBL-EBI
WormBase CE06972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48275 Hypothetical protein C53B7.2 [Caenorhabditis elegans] ref|NP_509154.1| C53B7.2 [Caenorhabditis elegans] 1.0E-102
blast AAC48275 Hypothetical protein C53B7.2 [Caenorhabditis elegans] ref|NP_509154.1| C53B7.2 [Caenorhabditis elegans] 2.0E-73
blast AAC48275 Hypothetical protein C53B7.2 [Caenorhabditis elegans] ref|NP_509154.1| C53B7.2 [Caenorhabditis elegans] 3.0E-67
blast CAE65801 Hypothetical protein CBG10908 [Caenorhabditis briggsae] 2.0E-31
blast CAE65801 Hypothetical protein CBG10908 [Caenorhabditis briggsae] 5.0E-30
blast CAE65801 Hypothetical protein CBG10908 [Caenorhabditis briggsae] 7.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.1E-22
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 6.1E-22
Sequence
Target Sequence 
>C. ELEGANS:181220_AT
aatgagcaatactctccgtgtactcaaatgtgcccaccaacatgtgaatctccaaaccca
caatgcagagttgactgcacccgtccatcttgtacctgcttgccaggccacgtctactca
aactcccgtcaatgcatcccagccaattcttgctaccaaactcaatcgcttcgctgccga
atgaacaacgactgtcgtccaggaatgtattgcatcaatggatactgtggcgcagcatca
ggagtttatacgagaacggttgtgagctcatcctctttgtcatcctcatcttctggtcat
cgtcatcactctcaccgatcgcaaggcgagtgctccctagataccgcagtgatcgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGAGCAATACTCTCCGTGTACTC 471 165 106 Antisense
TCCGTGTACTCAAATGTGCCCACCA 214 595 120 Antisense
TGTGCCCACCAACATGTGAATCTCC 334 557 134 Antisense
TGAATCTCCAAACCCACAATGCAGA 215 575 150 Antisense
AATGCAGAGTTGACTGCACCCGTCC 479 165 167 Antisense
CCCAGCCAATTCTTGCTACCAAACT 184 259 243 Antisense
TCAATCGCTTCGCTGCCGAATGAAC 265 629 267 Antisense
GCATCAATGGATACTGTGGCGCAGC 573 307 317 Antisense
GTGGCGCAGCATCAGGAGTTTATAC 296 491 332 Antisense
AGAACGGTTGTGAGCTCATCCTCTT 100 73 358 Antisense
CTCCCTAGATACCGCAGTGATCGTT 115 235 438 Antisense
Sequence Source Affymetrix Proprietary Database