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[181219_at]

Description F21A10.3 /REP_DB=WormBase Gene ID /WP=CE18625 /TR=Q9XXN8 /GB=CAA16506.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 28      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 57.1
(0.4)
A 		93
(3)
A 		36.3
(-1.1)
A 		10.1
(-3)
A 		83
B 57.1
(-1.7)
A 		85.3
(0.8)
A 		42.5
(-3)
A 		109.7
(3)
A 		67
C 74.7
(-0.5)
A 		32.8
(-2.6)
A 		25.7
(-3)
A 		141.2
(3)
A 		116
avr 63
(0.2) 		70.4
(1.1) 		34.8
(-3) 		87
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 55.4
(2.8)
A 		9.2
(-2.7)
A 		42.2
(1.2)
A 		6.7
(-3)
A 		19.9
(-1.4)
A 		57.1
(3)
A 		50
B 48.5
(1.8)
A 		25
(-0.9)
A 		59.4
(3)
A 		6.3
(-3)
A 		47
(1.6)
A 		36.8
(0.4)
A 		53
C 49.9
(0.4)
A 		86
(3)
A 		44.9
(-0)
A 		64.4
(1.4)
A 		16.3
(-2.1)
A 		4.2
(-3)
A 		82
avr 51.3
(3) 		40.1
(0.4) 		48.8
(2.4) 		25.8
(-3) 		27.7
(-2.6) 		32.7
(-1.4) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 20.8
(3)
A 		20.2
(2.8)
A 		9.5
(-0.5)
A 		1.5
(-3)
A 		19
B 18.2
(0.7)
A 		21.1
(2)
A 		9.8
(-3)
A 		23.4
(3)
A 		14
C 24.7
(3)
A 		9.4
(-2.8)
A 		9
(-3)
A 		23.8
(2.7)
A 		16
avr 21.2
(3) 		16.9
(0.8) 		9.4
(-3) 		16.2
(0.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.2
(1.2)
A 		3.3
(-2.2)
A 		9.2
(0.7)
A 		1.7
(-3)
A 		6
(-0.9)
A 		13.9
(3)
A 		12
B 16.9
(2.2)
A 		8.3
(-0.7)
A 		14.4
(1.4)
A 		1.7
(-3)
A 		19.1
(3)
A 		13.7
(1.1)
A 		17
C 18.5
(1.1)
A 		26.2
(3)
A 		11.4
(-0.6)
A 		13
(-0.2)
A 		5.3
(-2.1)
A 		1.4
(-3)
A 		25
avr 15.2
(3) 		12.6
(1.4) 		11.7
(0.8) 		5.5
(-3) 		10.1
(-0.2) 		9.7
(-0.4) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16335
Sequence Type Exemplar sequence
Representative Public ID F21A10.3 NCBI
Target Description F21A10.3 /REP_DB=WormBase Gene ID /WP=CE18625 /TR=Q9XXN8 /GB=CAA16506.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10186300:10190377:-1 11/11 None
SNAP00000008359 ENSEMBL cdna:SNAP chromosome:CEL140:X:10188296:10188712:-1 11/11 None
F21A10.2a.1 ENSEMBL cdna:known chromosome:CEL140:X:10180880:10188710:-1 gene:F21A10.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F21A10.2a.4 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10188295-10188712(-) 100.0 100.0
Public Domain and Genome References
Ensembl F21A10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44121 Hypothetical protein F21A10.2b [Caenorhabditis elegans] ref|NP_741883.1| F21A10.2b [Caenorhabditis elegans] 0.0
blast CAD44135 Hypothetical protein F21A10.2c [Caenorhabditis elegans] emb|CAD44122.1| Hypothetical protein F21A10.2c [Caenorhabditis elegans] ref|NP_509709.2| F21A10.2c [Caenorhabditis elegans] 0.0
blast CAA16508 Hypothetical protein F21A10.2a [Caenorhabditis elegans] ref|NP_741884.1| F21A10.2a [Caenorhabditis elegans] 0.0
blast T21176 hypothetical protein F21A10.3 - Caenorhabditis elegans 5.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
F21A10.2a.1 1 624-646
GENEFINDER00000008362 1 120-142
SNAP00000008359 1 19-41
Sequence
Target Sequence 
>C. ELEGANS:181219_AT
gcatcgcaaaagcgactccctttctcgcgagaaagaaagaattgctcgtgtgctgccttt
ccccgcattcgcatcaatcgctgtggcactcattttttgtgtctcctcatacttctcgcc
ctcctcgtccctcctcagtaccccccagtcaggcaagggtgcccgcgtgtgtggtcaaac
gaaagaacacgatatatgcaacgagagtgaaagagtgcgcgacctcgaggagacgacaag
agaaaaaagagcgagcgggtgggcagaagagagcgacggcacagtagagaccttctacca
cacacacattcgccatcgcggagactggtacgagccaaagagcgactgcgcttcggtcta
tcttctgtcaaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCGCAAAAGCGACTCCCTTTCT 230 309 18 Antisense
GAAAGAATTGCTCGTGTGCTGCCTT 544 359 52 Antisense
GCATCAATCGCTGTGGCACTCATTT 86 309 88 Antisense
TGGCACTCATTTTTTGTGTCTCCTC 28 547 101 Antisense
TGCCCGCGTGTGTGGTCAAACGAAA 665 583 177 Antisense
TGCGCGACCTCGAGGAGACGACAAG 277 583 233 Antisense
GAGCGACGGCACAGTAGAGACCTTC 109 383 288 Antisense
CACATTCGCCATCGCGGAGACTGGT 283 193 322 Antisense
GGTACGAGCCAAAGAGCGACTGCGC 414 503 344 Antisense
AAAGAGCGACTGCGCTTCGGTCTAT 142 121 354 Antisense
CTTCGGTCTATCTTCTGTCAAAAAA 170 221 368 Antisense
Sequence Source Affymetrix Proprietary Database