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[181217_at]

Description C31H1.8 /REP_DB=WormBase Gene ID /WP=CE27808 /TR=Q18343 /GB=AAA83612.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 3.3
(-3)
A 		9.8
(-2.4)
A 		3.7
(-3)
A 		65.2
(3)
A 		62
B 4.3
(-3)
A 		11.7
(-1.8)
A 		10.3
(-2)
A 		41.9
(3)
A 		38
C 2.9
(-3)
A 		8.4
(-2.3)
A 		16.4
(-1.3)
A 		50.9
(3)
A 		48
avr 3.5
(-3) 		10
(-2.2) 		10.1
(-2.2) 		52.7
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 9.7
(-2.9)
A 		2.4
(-3)
A 		14.1
(-2.8)
A 		82
(-1.4)
A 		217.6
(1.3)
A 		300.5
(3)
A 		298
B 4.3
(-3)
A 		7.4
(-2.9)
A 		53.1
(-1.9)
A 		77.8
(-1.3)
A 		220.8
(2.1)
A 		259.6
(3)
P 		255
C 3.3
(-3)
A 		14.4
(-2.8)
A 		9.2
(-2.9)
A 		72.5
(-1.7)
A 		175.6
(0.3)
P 		317.4
(3)
P 		314
avr 5.8
(-3) 		8.1
(-3) 		25.5
(-2.6) 		77.4
(-1.5) 		204.7
(1.2) 		292.5
(3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-2.9)
A 		2.1
(-2.2)
A 		1
(-3)
A 		9.5
(3)
A 		9
B 1.4
(-3)
A 		2.9
(-1.8)
A 		2.4
(-2.2)
A 		8.9
(3)
A 		8
C 1
(-3)
A 		2.4
(-1.9)
A 		5.7
(0.7)
A 		8.6
(3)
A 		8
avr 1.2
(-3) 		2.5
(-2) 		3
(-1.6) 		9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		0.8
(-3)
A 		3.1
(-2.8)
A 		20.8
(-1.3)
A 		65.7
(2.4)
A 		73.2
(3)
A 		72
B 1.5
(-3)
A 		2.5
(-2.9)
A 		12.9
(-2.3)
A 		20.6
(-1.8)
A 		89.7
(2.6)
A 		96.8
(3)
P 		95
C 1.2
(-3)
A 		4.4
(-2.8)
A 		2.3
(-2.9)
A 		14.6
(-2.2)
A 		56.8
(0.2)
P 		106.3
(3)
P 		105
avr 1.5
(-3) 		2.6
(-2.9) 		6.1
(-2.7) 		18.7
(-1.9) 		70.7
(1.6) 		92.1
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11083
Sequence Type Exemplar sequence
Representative Public ID C31H1.8 NCBI
Target Description C31H1.8 /REP_DB=WormBase Gene ID /WP=CE27808 /TR=Q18343 /GB=AAA83612.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068467 NCBI Caenorhabditis elegans C31H1.8 (C31H1.8) mRNA, complete cds. 11/11 None
SNAP00000016612 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5811926:5814119:-1 10/11 None
GENEFINDER00000016617 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5811926:5814119:-1 10/11 None
C31H1.8 ENSEMBL cdna:known chromosome:CEL140:IV:5811639:5814119:-1 gene:C31H1.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5811931-5814125(-) 99.58 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H1.8
Entrez Gene 177351 Entrez gene
SwissProt Q18343 EMBL-EBI
WormBase CE27808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83612 Hypothetical protein C31H1.8 [Caenorhabditis elegans] ref|NP_500868.1| C31H1.8 [Caenorhabditis elegans] 0.0
blast CAE72645 Hypothetical protein CBG19851 [Caenorhabditis briggsae] 1.0E-154
blast CAE72645 Hypothetical protein CBG19851 [Caenorhabditis briggsae] 1.0E-149
blast CAE72645 Hypothetical protein CBG19851 [Caenorhabditis briggsae] 1.0E-145
blast CAE72652 Hypothetical protein CBG19859 [Caenorhabditis briggsae] 3.0E-51
Sequence
Target Sequence 
>C. ELEGANS:181217_AT
acgtctgttccagtcacaaagattctggatgaacatccgccgctgattgttgacgaagaa
gttcgtttgaagagctcttatcagttcaatccggtcactggagaaccgattcccgacgat
gagcagcagcaagaacaaactgagattgaggttaataagaaaataaaaaaaccaaaaata
gtgccaaatcaaacattattaggcaacgaacacgatattttcccccgcttttccattttt
attgggttttacaaagcaagtatcgaggatccactggaaatcaatgatttcgtggaaatg
ttcccattaattttggtgcttctcgaaaaagctggaatccaggaactggaagacggcgat
gctccagaaaaatcggtttcaaaatatccgaaaaaacgatcgattgtcgatggagcgtca
tcagaaacatgtgaagatacacaatcggttggctcgtctgaaagttctgagccaagatct
ccagaatttactgaatattcggaatcggaagacactgctgcggattcggagacttcagat
tccgagtcttcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTCTGTTCCAGTCACAAAGATTC 484 95 1054 Antisense
TGAACATCCGCCGCTGATTGTTGAC 454 573 1083 Antisense
AAGAGCTCTTATCAGTTCAATCCGG 34 155 1123 Antisense
GGTCACTGGAGAACCGATTCCCGAC 14 501 1146 Antisense
CGATTCCCGACGATGAGCAGCAGCA 413 247 1160 Antisense
TAGGCAACGAACACGATATTTTCCC 649 653 1253 Antisense
GTTCCCATTAATTTTGGTGCTTCTC 597 441 1353 Antisense
CAGGAACTGGAAGACGGCGATGCTC 504 207 1393 Antisense
GATACACAATCGGTTGGCTCGTCTG 559 423 1489 Antisense
TCGGAAGACACTGCTGCGGATTCGG 415 605 1558 Antisense
GACTTCAGATTCCGAGTCTTCATCT 423 371 1584 Antisense
Sequence Source Affymetrix Proprietary Database