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[181215_at]

Description T21C9.11 /REP_DB=WormBase Gene ID /WP=CE06480 /TR=Q22646 /GB=CAA97338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 213.3
(3)
A 		142.4
(-1.3)
M 		113.4
(-3)
A 		161.8
(-0.1)
P 		100
B 186.8
(1.3)
A 		223
(3)
A 		92.5
(-3)
A 		210.3
(2.4)
P 		131
C 230.1
(1.8)
P 		210.4
(0.8)
A 		134
(-3)
P 		253.9
(3)
P 		120
avr 210.1
(3) 		191.9
(1.9) 		113.3
(-3) 		208.7
(2.9) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 225.4
(3)
P 		145.2
(-1.3)
P 		211.3
(2.2)
P 		156.8
(-0.7)
A 		210.1
(2.2)
M 		114.6
(-3)
P 		111
B 176.6
(1.8)
P 		191
(3)
P 		141.8
(-1.2)
P 		176.7
(1.8)
P 		120.4
(-3)
M 		157.8
(0.2)
P 		71
C 192.3
(0.9)
P 		237.4
(3)
P 		179.4
(0.3)
P 		179.5
(0.3)
A 		107.2
(-3)
A 		137.1
(-1.6)
P 		130
avr 198.1
(3) 		191.2
(2.3) 		177.5
(1) 		171
(0.4) 		145.9
(-2.1) 		136.5
(-3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 77.6
(3)
A 		30.9
(-2.2)
M 		29.7
(-2.3)
A 		23.7
(-3)
P 		54
B 59.6
(3)
A 		55.1
(2.3)
A 		21.4
(-3)
A 		44.8
(0.7)
P 		38
C 76.2
(3)
P 		60.5
(0.2)
A 		46.7
(-2.3)
P 		42.8
(-3)
P 		33
avr 71.1
(3) 		48.8
(-0.5) 		32.6
(-3) 		37.1
(-2.3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 41.6
(-0.7)
P 		51.6
(1)
P 		46
(0.1)
P 		39.8
(-1)
A 		63.4
(3)
M 		27.9
(-3)
P 		36
B 61.5
(2.6)
P 		63.6
(3)
P 		34.4
(-3)
P 		46.8
(-0.5)
P 		48.9
(-0)
M 		58.8
(2)
P 		29
C 71.3
(2.8)
P 		72.4
(3)
P 		45.7
(-1.2)
P 		36.1
(-2.8)
A 		34.7
(-3)
A 		45.9
(-1.2)
P 		38
avr 58.1
(1.8) 		62.5
(3) 		42
(-2.7) 		40.9
(-3) 		49
(-0.8) 		44.2
(-2.1) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12274
Sequence Type Exemplar sequence
Representative Public ID T21C9.11 NCBI
Target Description T21C9.11 /REP_DB=WormBase Gene ID /WP=CE06480 /TR=Q22646 /GB=CAA97338.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073319 NCBI Caenorhabditis elegans T21C9.11 (T21C9.11) mRNA, complete cds. 11/11 None
SNAP00000011990 ENSEMBL cdna:SNAP chromosome:CEL140:V:10596671:10597488:-1 11/11 None
GENEFINDER00000012002 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10596671:10597488:-1 11/11 None
T21C9.11 ENSEMBL cdna:known chromosome:CEL140:V:10596671:10597488:-1 gene:T21C9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10596670-10597488(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21C9.11
Entrez Gene 188689 Entrez gene
SwissProt Q22646 EMBL-EBI
WormBase CE06480 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97338 Hypothetical protein T21C9.11 [Caenorhabditis elegans] ref|NP_505720.1| T21C9.11 [Caenorhabditis elegans] 1.0E-117
blast CAE64856 Hypothetical protein CBG09652 [Caenorhabditis briggsae] 1.0E-41
blast CAE64857 Hypothetical protein CBG09653 [Caenorhabditis briggsae] 6.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505720.1 4 64-86,101-123,128-150,165-187
T21C9.11 4 64-86,101-123,128-150,165-187
SNAP00000011990 4 64-86,101-123,128-150,165-187
GENEFINDER00000012002 4 64-86,101-123,128-150,165-187
Sequence
Target Sequence 
>C. ELEGANS:181215_AT
gcttcctatccatcgtgttcaaaaacccatttacccaccacttccacaaatccgtaagaa
cagattcaatattcaaatcgaatgggttcgtcattcaaaactcacttgttctgcttactt
gttgattggtattcttttgaccacttactactcggcatgcttcatgactcaatatggtac
catcgacaaaatctatgagatcaagccgaatttggctctcagtgagccagttctcactcg
agttataatgattcaatggttatttctggctgctagtcttctctttggaatgtcaatcta
tcgtcgcattttcatgcccctttatatttttttggctgtaatggcaactaatggcacgct
gatcttatttgttgttaaagtaaagcaatacatggaaggcaagatccgccatgatgatct
gtccctcaatctcgtcggtattctacttttcactgccactgctcacaatctagtctatct
ctatgcaatgcatgttcatctcaactctcgtgcttataagagagcgagccgtcctgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCCTATCCATCGTGTTCAAAAA 452 305 87 Antisense
CACTTACTACTCGGCATGCTTCATG 466 197 228 Antisense
GGTTATTTCTGGCTGCTAGTCTTCT 536 505 344 Antisense
GTCAATCTATCGTCGCATTTTCATG 527 463 378 Antisense
CATTTTCATGCCCCTTTATATTTTT 626 215 393 Antisense
ATGGCACGCTGATCTTATTTGTTGT 441 53 437 Antisense
AGATCCGCCATGATGATCTGTCCCT 106 67 488 Antisense
TCGTCGGTATTCTACTTTTCACTGC 292 605 518 Antisense
GCCACTGCTCACAATCTAGTCTATC 507 279 541 Antisense
TTCATCTCAACTCTCGTGCTTATAA 287 687 581 Antisense
ATAAGAGAGCGAGCCGTCCTGTACA 260 25 602 Antisense
Sequence Source Affymetrix Proprietary Database