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[181214_at]

Description ZK721.3 /REP_DB=WormBase Gene ID /WP=CE05107 /TR=Q9GYF2 /GB=AAG01565.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 166.9
(3)
P 		60.6
(-1.1)
A 		12.4
(-3)
A 		91.6
(0.1)
A 		155
B 136.4
(3)
M 		57.8
(-1.6)
A 		32.9
(-3)
A 		97.6
(0.8)
A 		104
C 163.3
(3)
A 		79.6
(-2.7)
A 		75.6
(-3)
A 		109.1
(-0.7)
A 		88
avr 155.5
(3) 		66
(-1.7) 		40.3
(-3) 		99.4
(0.1) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 115
(1)
A 		147.3
(3)
P 		99.5
(0.1)
A 		74.5
(-1.5)
A 		82.7
(-1)
A 		50
(-3)
A 		97
B 140.8
(3)
P 		133.3
(2.6)
P 		112
(1.4)
A 		88.9
(0)
A 		98.3
(0.6)
P 		35.3
(-3)
A 		106
C 141.8
(3)
P 		106.3
(0.9)
P 		137.4
(2.7)
A 		96.7
(0.3)
A 		92.7
(0.1)
A 		41.1
(-3)
A 		101
avr 132.5
(3) 		129
(2.8) 		116.3
(1.9) 		86.7
(-0) 		91.2
(0.3) 		42.1
(-3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 60.8
(3)
P 		13.2
(-2)
A 		3.2
(-3)
A 		13.4
(-1.9)
A 		58
B 43.5
(3)
M 		14.3
(-1.9)
A 		7.6
(-3)
A 		20.8
(-0.8)
A 		36
C 54.1
(3)
A 		22.9
(-2.2)
A 		26.4
(-1.7)
A 		18.4
(-3)
A 		36
avr 52.8
(3) 		16.8
(-2.3) 		12.4
(-3) 		17.5
(-2.2) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 21.2
(-1.7)
A 		52.4
(3)
P 		21.7
(-1.6)
A 		18.9
(-2)
A 		24.9
(-1.1)
A 		12.2
(-3)
A 		40
B 49
(3)
P 		44.4
(2.2)
P 		27.2
(-0.7)
A 		23.5
(-1.3)
A 		39.9
(1.5)
P 		13.2
(-3)
A 		36
C 52.6
(3)
P 		32.4
(-0.1)
P 		35
(0.3)
A 		19.4
(-2.1)
A 		30
(-0.5)
A 		13.7
(-3)
A 		39
avr 40.9
(2.6) 		43.1
(3) 		28
(-0) 		20.6
(-1.5) 		31.6
(0.7) 		13
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17092
Sequence Type Exemplar sequence
Representative Public ID ZK721.3 NCBI
Target Description ZK721.3 /REP_DB=WormBase Gene ID /WP=CE05107 /TR=Q9GYF2 /GB=AAG01565.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077086(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077086 NCBI Caenorhabditis elegans ZK721.3 (ZK721.3) mRNA, complete cds. 10/11 None
GENEFINDER00000024787 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8784274:8786736:1 11/11 None
ZK721.3 ENSEMBL cdna:known chromosome:CEL140:X:8784471:8786736:1 gene:ZK721.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024777 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8784444-8786735(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK721.3
Entrez Gene 191416 Entrez gene
SwissProt Q9GYF2 EMBL-EBI
WormBase CE35818 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG01565 Hypothetical protein ZK721.3 [Caenorhabditis elegans] ref|NP_509487.2| ZK721.3 [Caenorhabditis elegans] 1.0E-164
blast AAG01565 Hypothetical protein ZK721.3 [Caenorhabditis elegans] ref|NP_509487.2| ZK721.3 [Caenorhabditis elegans] 1.0E-162
blast CAE69356 Hypothetical protein CBG15445 [Caenorhabditis briggsae] 1.0E-122
blast CAE69356 Hypothetical protein CBG15445 [Caenorhabditis briggsae] 1.0E-121
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024787 2 29-48,58-80
Sequence
Target Sequence 
>C. ELEGANS:181214_AT
gatgatccttctgaccagtgttcactacctaaatctgatatatatatgactcccccagtt
gaaatgccaccaaacaaaatgggcgccaaagaaaggtccacgttcatcaatcaacttgtt
tcggctttgcaatatgcaagtaacaaatcactagcatcagctaaaggacaaaacaatgtg
gatgcgcaggagggtgccgtggaaaacgacgaagagcaatttcgtcaccaacccgtatta
agaaaattggataaatcggcaactacgaatgacatcagtagcataatcaaacaacggtat
attcgattttccaacactttgcaagtaatttcaagagacactaatttcatcggagaaaat
cacaaatatgtatcaatgggcagtttggagcgaagttgcttactgaacgacatgtccggc
aacagtgattctacaagtacagcagttcaaaagtcaattactagtttcagatcttattca
tccaactcaaatgtttttcgcagcagtgcaacaaactacaattgcgacacggggcttctt
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATCCTTCTGACCAGTGTTCAC 92 411 319 Antisense
TATATGACTCCCCCAGTTGAAATGC 336 639 361 Antisense
AAGGTCCACGTTCATCAATCAACTT 695 159 411 Antisense
CAATCAACTTGTTTCGGCTTTGCAA 611 169 426 Antisense
GATGCGCAGGAGGGTGCCGTGGAAA 193 415 499 Antisense
CGAAGAGCAATTTCGTCACCAACCC 556 251 528 Antisense
ATTCGATTTTCCAACACTTTGCAAG 590 9 619 Antisense
GTTGCTTACTGAACGACATGTCCGG 473 439 713 Antisense
GACATGTCCGGCAACAGTGATTCTA 629 369 727 Antisense
GTTTCAGATCTTATTCATCCAACTC 692 449 782 Antisense
ACAATTGCGACACGGGGCTTCTTTT 267 115 836 Antisense
Sequence Source Affymetrix Proprietary Database