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[181211_at]

Description W04C9.6 /REP_DB=WormBase Gene ID /WP=CE18337 /TR=Q9TZE1 /GB=AAC68729.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 15      6grp_total > 19      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 104.1
(-2)
A 		84.8
(-3)
P 		114.4
(-1.4)
P 		196
(3)
A 		111
B 87.5
(-2)
P 		82.6
(-2.3)
A 		70.1
(-3)
A 		175.5
(3)
A 		105
C 128.7
(-0.1)
A 		122.4
(-0.6)
M 		89.4
(-3)
P 		171.4
(3)
P 		82
avr 106.8
(-2) 		96.6
(-2.6) 		91.3
(-3) 		181
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 129.6
(3)
A 		88.7
(0)
A 		67.5
(-1.5)
P 		48.9
(-2.9)
A 		103.3
(1.1)
P 		47.5
(-3)
P 		82
B 139.2
(3)
P 		46.2
(-3)
A 		57.7
(-2.3)
A 		79.8
(-0.8)
P 		69.4
(-1.5)
A 		90.8
(-0.1)
P 		93
C 87.5
(2.9)
A 		73.6
(-0.9)
P 		66.1
(-3)
P 		71.2
(-1.6)
A 		87.8
(3)
A 		67.7
(-2.6)
P 		22
avr 118.8
(3) 		69.5
(-2.4) 		63.8
(-3) 		66.6
(-2.7) 		86.8
(-0.5) 		68.7
(-2.5) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 37.9
(3)
A 		18.4
(-3)
P 		29.9
(0.5)
P 		28.7
(0.2)
A 		20
B 27.9
(0.3)
P 		20.4
(-1.8)
A 		16.2
(-3)
A 		37.4
(3)
A 		21
C 42.6
(3)
A 		35.2
(-0.2)
M 		31.2
(-2)
P 		28.9
(-3)
P 		14
avr 36.1
(3) 		24.7
(-3) 		25.8
(-2.4) 		31.7
(0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 23.9
(0.7)
A 		31.5
(3)
A 		14.7
(-2.1)
P 		12.4
(-2.8)
A 		31.2
(2.9)
P 		11.6
(-3)
P 		20
B 48.4
(3)
P 		15.4
(-2.8)
A 		14
(-3)
A 		21.1
(-1.8)
P 		28.2
(-0.5)
A 		33.9
(0.5)
P 		34
C 32.4
(3)
A 		22.5
(-0.3)
P 		16.8
(-2.2)
P 		14.3
(-3)
A 		28.4
(1.7)
A 		22.7
(-0.2)
P 		18
avr 34.9
(3) 		23.1
(-0.6) 		15.2
(-3) 		15.9
(-2.8) 		29.3
(1.3) 		22.7
(-0.7) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2548
Sequence Type Exemplar sequence
Representative Public ID W04C9.6 NCBI
Target Description W04C9.6 /REP_DB=WormBase Gene ID /WP=CE18337 /TR=Q9TZE1 /GB=AAC68729.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058336 NCBI Caenorhabditis elegans W04C9.6 (W04C9.6) mRNA, complete cds. 11/11 None
SNAP00000019988 ENSEMBL cdna:SNAP chromosome:CEL140:I:482043:486778:-1 11/11 None
GENEFINDER00000019994 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:482043:487860:-1 10/11 None
W04C9.6 ENSEMBL cdna:known chromosome:CEL140:I:482482:487993:-1 gene:W04C9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:482481-487993(-) 97.63 100.0
Public Domain and Genome References
Gene Title
Ensembl W04C9.6
Entrez Gene 189185 Entrez gene
SwissProt Q9TZE1 EMBL-EBI
WormBase CE18337 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68729 Hypothetical protein W04C9.6 [Caenorhabditis elegans] ref|NP_490737.1| W04C9.6 [Caenorhabditis elegans] 0.0
blast CAE74832 Hypothetical protein CBG22670 [Caenorhabditis briggsae] 0.0
blast AAC68729 Hypothetical protein W04C9.6 [Caenorhabditis elegans] ref|NP_490737.1| W04C9.6 [Caenorhabditis elegans] 1.0E-103
blast CAE61273 Hypothetical protein CBG05088 [Caenorhabditis briggsae] 5.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490737.1 11 10-32,53-75,85-102,109-131,192-214,249-271,286-308,328-350,354-376,397-414,424-443
W04C9.6 11 10-32,53-75,85-102,109-131,192-214,249-271,286-308,328-350,354-376,397-414,424-443
SNAP00000019988 3 55-77,186-206,216-235
GENEFINDER00000019994 10 30-49,59-76,83-105,166-188,223-245,260-282,302-324,328-350,371-388,398-417
Sequence
Target Sequence 
>C. ELEGANS:181211_AT
tattattaagtttctcccaccatctccaccatcttacgtgatggctccaatgatacgaat
ggctccggcacccccaccacctccaatgcctccgatggtattccaaatgtccccgtcccc
tcaaatgtccccacaaatgtccccacagatgtcccaacaaaggaattacccccaactcca
aatgatggcttctcagactccatctatggctcctctgccgcctccgatgcctccgatcgt
tggatcctcctcagcgatcagttcaatacagaacctcctggagaagcagcaaaatcaata
tgaaactgcaccagagacaccacgttgggaccgccaggagcccgaatatcagcatattga
tgagcaagttgttgctccggacgttgtggtggcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATTAAGTTTCTCCCACCATCT 341 663 1431 Antisense
CCATCTCCACCATCTTACGTGATGG 430 271 1450 Antisense
CAATGATACGAATGGCTCCGGCACC 100 183 1478 Antisense
CAATGCCTCCGATGGTATTCCAAAT 587 181 1514 Antisense
CGATGGTATTCCAAATGTCCCCGTC 24 251 1523 Antisense
TCCCCACAGATGTCCCAACAAAGGA 568 595 1570 Antisense
GATGGCTTCTCAGACTCCATCTATG 685 405 1614 Antisense
CCTCCTCAGCGATCAGTTCAATACA 456 267 1676 Antisense
GAAACTGCACCAGAGACACCACGTT 585 357 1732 Antisense
GCCAGGAGCCCGAATATCAGCATAT 682 279 1763 Antisense
TTGCTCCGGACGTTGTGGTGGCGGA 103 701 1802 Antisense
Sequence Source Affymetrix Proprietary Database