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[181210_at]

Description C26B9.1 /REP_DB=WormBase Gene ID /WP=CE04095 /TR=Q18202 /GB=AAA82457.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 21      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 301.1
(2.4)
P 		220.7
(-2)
P 		202.7
(-3)
P 		312.4
(3)
P 		110
B 231.2
(-1.2)
P 		219.3
(-2.4)
P 		212.7
(-3)
P 		275.1
(3)
P 		62
C 255.2
(1.9)
P 		271.1
(3)
P 		187.9
(-3)
P 		252.7
(1.7)
P 		83
avr 262.5
(1.7) 		237
(-0.3) 		201.1
(-3) 		280.1
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 308.1
(1.5)
P 		235.5
(-0.8)
P 		201.8
(-1.9)
P 		240
(-0.7)
P 		168.4
(-3)
P 		355.6
(3)
P 		187
B 249.6
(3)
P 		191.5
(-1.7)
P 		183.1
(-2.4)
P 		175.6
(-3)
P 		176.6
(-2.9)
P 		188.7
(-1.9)
P 		74
C 323.7
(3)
P 		174.6
(-3)
P 		270.4
(0.9)
P 		210.3
(-1.6)
P 		215.7
(-1.3)
P 		198.5
(-2)
P 		149
avr 293.8
(3) 		200.5
(-2.2) 		218.4
(-1.2) 		208.6
(-1.8) 		186.9
(-3) 		247.6
(0.4) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 109.6
(3)
P 		47.9
(-2.8)
P 		53
(-2.3)
P 		45.7
(-3)
P 		64
B 73.7
(3)
P 		54.2
(-1.8)
P 		49.3
(-3)
P 		58.6
(-0.7)
P 		24
C 84.5
(3)
P 		77.9
(2.1)
P 		65.5
(0.3)
P 		42.6
(-3)
P 		42
avr 89.3
(3) 		60
(-1.4) 		55.9
(-2) 		49
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 56.8
(-1.2)
P 		83.8
(2.6)
P 		43.9
(-3)
P 		60.9
(-0.6)
P 		50.8
(-2)
P 		86.6
(3)
P 		43
B 86.8
(3)
P 		63.7
(-0.3)
P 		44.5
(-3)
P 		46.5
(-2.7)
P 		71.8
(0.9)
P 		70.4
(0.7)
P 		42
C 120
(3)
P 		53.3
(-2.2)
P 		68.8
(-1)
P 		42.3
(-3)
P 		69.8
(-0.9)
P 		66.5
(-1.1)
P 		78
avr 87.9
(3) 		66.9
(-0.3) 		52.4
(-2.6) 		49.9
(-3) 		64.1
(-0.8) 		74.5
(0.9) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16000
Sequence Type Exemplar sequence
Representative Public ID C26B9.1 NCBI
Target Description C26B9.1 /REP_DB=WormBase Gene ID /WP=CE04095 /TR=Q18202 /GB=AAA82457.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029262(11), NM_001029263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029262 NCBI Caenorhabditis elegans C26B9.1a (C26B9.1) mRNA, complete cds. 11/11 None
NM_001029263 NCBI Caenorhabditis elegans C26B9.1b (C26B9.1) mRNA, complete cds. 11/11 None
SNAP00000015900 ENSEMBL cdna:SNAP chromosome:CEL140:X:5344582:5347065:1 11/11 None
GENEFINDER00000015901 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5344582:5347050:1 11/11 None
C26B9.1a ENSEMBL cdna:known chromosome:CEL140:X:5344552:5348681:1 gene:C26B9.1 11/11 A 
C26B9.1b ENSEMBL cdna:known chromosome:CEL140:X:5344831:5347927:1 gene:C26B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5344091-5347928(+) 100.0 100.0
Public Domain and Genome References
Ensembl C26B9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82457 Hypothetical protein C26B9.1a [Caenorhabditis elegans] ref|NP_001024433.1| C26B9.1a [Caenorhabditis elegans] 0.0
blast CAE68739 Hypothetical protein CBG14669 [Caenorhabditis briggsae] 1.0E-133
blast CAE68739 Hypothetical protein CBG14669 [Caenorhabditis briggsae] 1.0E-129
blast AAP68952 Hypothetical protein C26B9.1b [Caenorhabditis elegans] ref|NP_001024434.1| C26B9.1b [Caenorhabditis elegans] 1.0E-127
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024433.1 2 203-225,230-252
NP_001024434.1 2 36-58,63-85
C26B9.1a 2 203-225,230-252
C26B9.1b 2 36-58,63-85
SNAP00000015900 2 203-225,230-252
GENEFINDER00000015901 2 203-225,230-252
Sequence
Target Sequence 
>C. ELEGANS:181210_AT
atgttttccacgatatattcccgcctgatcgcaatatggatgacattctggattctaacc
ctaacgatcactcttcttttccaatcaaaaggtggatggcctgtcatgatttggtgcctt
gtatgggcggtgctactttttgttggagtgtacgcgtgtgcaatgataagaagaaggata
cggattggactgaaccacgttgtcgagaaagcaaacaagataattgttgatcgacacttt
ctgactggagtggaagatcgcggacaattgagctgccacaaagttgtgatccacttcatc
cgattcaatgttggagaatgtactgccgatgttatcaaacaattgaaaatcaaaagcact
ggcggatgtatatttggcggtaattcagaagaagtcaccgatgaaaatattgaaagagaa
gccgcatccttaattttgaaatatagtcaagaatatgtgaaaagtgttgtgaagaaacgg
ctaatattcccgagcaagccaattcatggagtttccaactacgcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTTCCACGATATATTCCCGCC 639 45 622 Antisense
ATTCCCGCCTGATCGCAATATGGAT 327 9 638 Antisense
GATTCTAACCCTAACGATCACTCTT 578 431 672 Antisense
GCCTGTCATGATTTGGTGCCTTGTA 522 283 720 Antisense
GTGCCTTGTATGGGCGGTGCTACTT 498 477 735 Antisense
GTTGATCGACACTTTCTGACTGGAG 153 439 847 Antisense
GATCGCGGACAATTGAGCTGCCACA 575 417 877 Antisense
AAGTTGTGATCCACTTCATCCGATT 476 155 902 Antisense
GAGAAGCCGCATCCTTAATTTTGAA 460 391 1037 Antisense
ATATTCCCGAGCAAGCCAATTCATG 656 15 1105 Antisense
TTCATGGAGTTTCCAACTACGCCCC 298 671 1124 Antisense
Sequence Source Affymetrix Proprietary Database