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[181209_at]

Description R13H7.2 /REP_DB=WormBase Gene ID /WP=CE12816 /TR=Q21990 /GB=AAB03179.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 05      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 324.6
(3)
P 		135.7
(-2)
P 		98.6
(-3)
P 		180.4
(-0.8)
P 		226
B 385
(3)
P 		134.2
(-2.1)
P 		91.9
(-3)
P 		182.8
(-1.1)
P 		293
C 329.5
(3)
P 		178.5
(-1.3)
P 		117.7
(-3)
P 		180.3
(-1.2)
P 		212
avr 346.4
(3) 		149.5
(-1.8) 		102.7
(-3) 		181.2
(-1.1) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 200.8
(0.9)
P 		257.2
(3)
P 		130.1
(-1.7)
P 		151.8
(-0.9)
P 		155.5
(-0.8)
P 		94.8
(-3)
P 		162
B 243.9
(3)
P 		204.9
(1.4)
P 		189.3
(0.8)
P 		112.4
(-2.3)
P 		156.6
(-0.6)
P 		96.4
(-3)
P 		148
C 352.4
(3)
P 		223.8
(0.1)
P 		174
(-1)
P 		190.5
(-0.6)
P 		146.2
(-1.6)
P 		83.3
(-3)
P 		269
avr 265.7
(3) 		228.6
(1.7) 		164.5
(-0.5) 		151.6
(-0.9) 		152.8
(-0.9) 		91.5
(-3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 118.2
(3)
P 		29.5
(-2.8)
P 		25.8
(-3)
P 		26.4
(-3)
P 		92
B 122.8
(3)
P 		33.1
(-2.3)
P 		21.3
(-3)
P 		38.9
(-2)
P 		102
C 109.1
(3)
P 		51.3
(-1.4)
P 		41
(-2.2)
P 		30.4
(-3)
P 		79
avr 116.7
(3) 		38
(-2.4) 		29.4
(-3) 		31.9
(-2.8) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 37
(-1.8)
P 		91.5
(3)
P 		28.3
(-2.5)
P 		38.5
(-1.6)
P 		46.9
(-0.9)
P 		23.1
(-3)
P 		68
B 84.9
(3)
P 		68.2
(1.2)
P 		46
(-1.2)
P 		29.8
(-3)
P 		63.6
(0.7)
P 		35.9
(-2.3)
P 		55
C 130.6
(3)
P 		68.3
(-0.6)
P 		44.3
(-2)
P 		38.3
(-2.4)
P 		47.3
(-1.9)
P 		27.9
(-3)
P 		103
avr 84.2
(3) 		76
(2.1) 		39.5
(-1.9) 		35.5
(-2.3) 		52.6
(-0.4) 		29
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10000
Sequence Type Exemplar sequence
Representative Public ID R13H7.2 NCBI
Target Description R13H7.2 /REP_DB=WormBase Gene ID /WP=CE12816 /TR=Q21990 /GB=AAB03179.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171370(11), NM_171369(11), NM_001028174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171370 NCBI Caenorhabditis elegans R13H7.2a (R13H7.2) mRNA, complete cds. 11/11 None
NM_171369 NCBI Caenorhabditis elegans R13H7.2b (R13H7.2) mRNA, complete cds. 11/11 None
NM_001028174 NCBI Caenorhabditis elegans R13H7.2c (R13H7.2) mRNA, complete cds. 11/11 None
SNAP00000029606 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6848115:6850483:-1 11/11 None
GENEFINDER00000029609 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6846806:6850825:-1 11/11 None
R13H7.2a ENSEMBL cdna:known chromosome:CEL140:IV:6846078:6859335:-1 gene:R13H7.2 11/11 A 
R13H7.2b ENSEMBL cdna:known chromosome:CEL140:IV:6846806:6852795:-1 gene:R13H7.2 11/11 None
R13H7.2c ENSEMBL cdna:known chromosome:CEL140:IV:6846806:6850483:-1 gene:R13H7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6848441-6850831(-) 100.0 100.0
Public Domain and Genome References
Ensembl R13H7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741433 R13H7.2a [Caenorhabditis elegans] 0.0
blast ABA03113 Hypothetical protein R13H7.2a [Caenorhabditis elegans] 0.0
blast NP_001023345 R13H7.2c [Caenorhabditis elegans] 0.0
blast NP_741432 R13H7.2b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741433.2 6 82-104,113-135,155-177,198-220,262-284,321-343
NP_741432.2 6 50-72,81-103,123-145,166-188,230-252,289-311
NP_001023345.1 6 44-66,75-97,117-139,160-182,224-246,283-305
R13H7.2a 6 82-104,113-135,155-177,198-220,262-284,321-343
R13H7.2b 6 50-72,81-103,123-145,166-188,230-252,289-311
R13H7.2c 6 44-66,75-97,117-139,160-182,224-246,283-305
SNAP00000029606 6 44-66,81-103,124-146,190-212,249-271,284-306
GENEFINDER00000029609 7 82-104,113-135,155-177,198-220,262-284,321-343,356-378
Sequence
Target Sequence 
>C. ELEGANS:181209_AT
cgttcaccaattcatttccgatatcattggcgtacagctcgtgtgttttatctgatcttt
tcaataattctgggttcatttctcctcactttcttccatacatttgagtataaatatggt
tatgcaatgattcgtaatggtacaaagttgtatggatcaccggttaatgttgacaagctc
gttgatgttccaacatgggtaaagacaatgattaaaaccttcaaaattctgcaagtggtt
gttggtgttgttcttccaacaattggaatctttatcttcaatatgctcattgttctcatg
ctccgcaaatctgagtacttcaattttcgatcagcagaaacaaaggatgaaaactcaaat
cgcaaatactcggatttggagattcgccaaaagcgtgacatcaaagtgacattcactgtc
ttggctatcatctgctgctacttcgtgactcatattccatcggtcattccatttgtgata
gagcttttcaactatcatccagactgggttaaagtctacgcaattcctatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTCACCAATTCATTTCCGATATC 130 247 562 Antisense
ATATCATTGGCGTACAGCTCGTGTG 536 19 582 Antisense
AGCTCGTGTGTTTTATCTGATCTTT 660 79 597 Antisense
AATAATTCTGGGTTCATTTCTCCTC 515 171 624 Antisense
AATATGCTCATTGTTCTCATGCTCC 571 173 841 Antisense
GAGTACTTCAATTTTCGATCAGCAG 75 399 874 Antisense
TCACTGTCTTGGCTATCATCTGCTG 446 627 974 Antisense
GCTACTTCGTGACTCATATTCCATC 678 301 998 Antisense
ATATTCCATCGGTCATTCCATTTGT 518 17 1013 Antisense
GCTTTTCAACTATCATCCAGACTGG 224 297 1044 Antisense
AAAGTCTACGCAATTCCTATTTCTG 504 121 1072 Antisense
Sequence Source Affymetrix Proprietary Database