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[181208_at]

Description T11F1.6 /REP_DB=WormBase Gene ID /WP=CE20056 /TR=Q9U8C9 /GB=AAC68711.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.1
(-1)
A 		2.7
(3)
A 		2.1
(-1)
A 		1.8
(-3)
A 		1
B 0.9
(-3)
A 		4.3
(0.9)
A 		3
(-0.6)
A 		6.1
(3)
A 		5
C 6.4
(3)
A 		2.5
(-1.5)
A 		1.2
(-3)
A 		5.9
(2.4)
A 		5
avr 3.1
(-0.6) 		3.2
(-0.4) 		2.1
(-3) 		4.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.6
(3)
A 		1.2
(-3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		9.3
(0.9)
A 		2.7
(-2.3)
A 		12
B 6.1
(3)
A 		1.7
(-2.4)
A 		5
(1.7)
A 		4.2
(0.7)
A 		2.9
(-0.9)
A 		1.2
(-3)
A 		5
C 1.4
(-1.7)
A 		1.7
(-1.2)
A 		4
(3)
A 		1.4
(-1.7)
A 		0.7
(-3)
A 		1.5
(-1.5)
A 		3
avr 7
(3) 		1.5
(-3) 		3.4
(-0.9) 		2.3
(-2.1) 		4.3
(0.1) 		1.8
(-2.7) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(3)
A 		0.6
(0.6)
A 		0.6
(0.6)
A 		0.3
(-3)
A 		1
B 0.3
(-3)
A 		1.1
(1.8)
A 		0.7
(-0.6)
A 		1.3
(3)
A 		1
C 2.1
(3)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		1
(-0.9)
A 		2
avr 1.1
(3) 		0.8
(-0.6) 		0.6
(-3) 		0.9
(0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2.5
(2.3)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		0.3
(-3)
A 		2.8
(3)
A 		0.6
(-2.3)
A 		3
B 2.1
(3)
A 		0.6
(-2.6)
A 		1.2
(-0.4)
A 		1.1
(-0.8)
A 		1.2
(-0.4)
A 		0.5
(-3)
A 		2
C 0.5
(-0.8)
A 		0.5
(-0.8)
A 		1
(3)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		0.5
(-0.8)
A 		1
avr 1.7
(3) 		0.5
(-3) 		0.8
(-1.5) 		0.6
(-2.5) 		1.4
(1.5) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4083
Sequence Type Exemplar sequence
Representative Public ID T11F1.6 NCBI
Target Description T11F1.6 /REP_DB=WormBase Gene ID /WP=CE20056 /TR=Q9U8C9 /GB=AAC68711.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062006 NCBI Caenorhabditis elegans T11F1.6 (T11F1.6) mRNA, complete cds. 11/11 None
SNAP00000009447 ENSEMBL cdna:SNAP chromosome:CEL140:II:2944670:2948373:1 11/11 None
T11F1.6 ENSEMBL cdna:known chromosome:CEL140:II:2944177:2946528:1 gene:T11F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2944175-2946527(+) 98.19 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F1.6
Entrez Gene 188413 Entrez gene
SwissProt Q9U8C9 EMBL-EBI
WormBase CE36893 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68711 Hypothetical protein T11F1.6 [Caenorhabditis elegans] ref|NP_494407.3| T11F1.6 [Caenorhabditis elegans] 0.0
blast F88085 protein T11F1.6 [imported] - Caenorhabditis elegans 0.0
blast AAC68707 Serpentine receptor, class w protein 79 [Caenorhabditis elegans] ref|NP_494408.2| Serpentine Receptor, class W family member (srw-79) [Caenorhabditis elegans] 1.0E-173
blast AAC68711 Hypothetical protein T11F1.6 [Caenorhabditis elegans] ref|NP_494407.3| T11F1.6 [Caenorhabditis elegans] 1.0E-139
blast F88085 protein T11F1.6 [imported] - Caenorhabditis elegans 1.0E-139
blast AAF40000 Hypothetical protein ZK355.6 [Caenorhabditis elegans] ref|NP_494405.1| ZK355.6 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.3E-14
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.0E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-18
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.3E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009447 7 327-349,356-378,388-404,417-439,484-506,533-555,575-597
Sequence
Target Sequence 
>C. ELEGANS:181208_AT
attggtggagattcgcggcactgacgtcacaaatttgtcgtttttgaagaagctggaaga
gattcgttcgaataatggggtgacacatgagaatgttctttttaacattcgcgataatcc
gaatatgacaacatttggaatgccggtgttgaatattctttccgacgaaaccaaaggccc
atttatcatgaacctggagaatctacatcctgacttttgtctaacatttcacgaaatgat
cgggtttctggacgctcaagtctattttaaaaatattcatgcaaactattgcctggacgg
tgtatcttttagcgaatctctatgtcagtttttcaatatgagctctcttcccgaaaagtg
cacttatatatatggaaatgtggaaattaacgctggagatgaagaatatgtatataaatt
gagttatgtatccgatatatacgggtccttgtctatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTGGAGATTCGCGGCACTGAC 390 3 798 Antisense
GCGGCACTGACGTCACAAATTTGTC 644 293 812 Antisense
GGTGTTGAATATTCTTTCCGACGAA 517 499 942 Antisense
GACGAAACCAAAGGCCCATTTATCA 3 381 961 Antisense
GAGAATCTACATCCTGACTTTTGTC 285 391 994 Antisense
AAATGATCGGGTTTCTGGACGCTCA 453 119 1031 Antisense
GCAAACTATTGCCTGGACGGTGTAT 205 319 1078 Antisense
GACGGTGTATCTTTTAGCGAATCTC 400 375 1093 Antisense
AGCGAATCTCTATGTCAGTTTTTCA 106 83 1108 Antisense
TGAGCTCTCTTCCCGAAAAGTGCAC 50 569 1136 Antisense
ATATATACGGGTCCTTGTCTATCAA 344 17 1232 Antisense
Sequence Source Affymetrix Proprietary Database