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[181207_at]

Description E04A4.6 /REP_DB=WormBase Gene ID /WP=CE16967 /TR=O44478 /GB=AAB92040.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 14      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 109.7
(0.2)
P 		83.6
(-1.4)
A 		58
(-3)
A 		156.3
(3)
P 		98
B 99.2
(1)
P 		33.2
(-3)
A 		82.7
(0)
A 		131.7
(3)
P 		99
C 147.3
(3)
P 		95.8
(-0.8)
A 		66.2
(-3)
M 		139.9
(2.5)
P 		81
avr 118.7
(1.1) 		70.9
(-2.8) 		69
(-3) 		142.6
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 157.1
(3)
A 		116.2
(1.3)
P 		79.2
(-0.2)
P 		92
(0.3)
A 		13
(-3)
A 		86.9
(0.1)
P 		144
B 129
(0.3)
P 		171.5
(3)
P 		107.2
(-1)
P 		130.1
(0.4)
P 		76
(-3)
P 		89.1
(-2.2)
P 		96
C 144.7
(3)
P 		124.3
(1.7)
P 		74.4
(-1.4)
A 		131
(2.1)
A 		49.9
(-3)
A 		74.9
(-1.4)
P 		95
avr 143.6
(3) 		137.3
(2.6) 		86.9
(-0.5) 		117.7
(1.4) 		46.3
(-3) 		83.6
(-0.7) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 40
(3)
P 		18.2
(-2.3)
A 		15.2
(-3)
A 		22.9
(-1.1)
P 		25
B 31.6
(3)
P 		8.2
(-3)
A 		19.2
(-0.2)
A 		28.1
(2.1)
P 		23
C 48.8
(3)
P 		27.5
(-2)
A 		23.1
(-3)
M 		23.6
(-2.9)
P 		26
avr 40.1
(3) 		18
(-3) 		19.2
(-2.7) 		24.9
(-1.1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 29
(1)
A 		41.3
(3)
P 		17.3
(-0.9)
P 		23.3
(0.1)
A 		3.9
(-3)
A 		21.2
(-0.2)
P 		37
B 44.9
(0.6)
P 		57.1
(3)
P 		26
(-3)
P 		34.5
(-1.4)
P 		30.9
(-2.1)
P 		33.2
(-1.6)
P 		31
C 53.6
(3)
P 		37.9
(0.5)
P 		18.9
(-2.6)
A 		26.3
(-1.4)
A 		16.1
(-3)
A 		25.1
(-1.6)
P 		38
avr 42.5
(2.4) 		45.4
(3) 		20.7
(-2.2) 		28
(-0.7) 		17
(-3) 		26.5
(-1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10392
Sequence Type Exemplar sequence
Representative Public ID E04A4.6 NCBI
Target Description E04A4.6 /REP_DB=WormBase Gene ID /WP=CE16967 /TR=O44478 /GB=AAB92040.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068227 NCBI Caenorhabditis elegans E04A4.6 (E04A4.6) mRNA, complete cds. 11/11 None
SNAP00000038152 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4745826:4747823:-1 11/11 None
GENEFINDER00000038157 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4745826:4747823:-1 11/11 None
E04A4.6 ENSEMBL cdna:known chromosome:CEL140:IV:4745785:4747823:-1 gene:E04A4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4745790-4747829(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04A4.6
Entrez Gene 184035 Entrez gene
SwissProt O44478 EMBL-EBI
WormBase CE16967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92040 Hypothetical protein E04A4.6 [Caenorhabditis elegans] ref|NP_500628.1| E04A4.6 [Caenorhabditis elegans] 0.0
blast CAE58577 Hypothetical protein CBG01743 [Caenorhabditis briggsae] 3.0E-95
blast CAE58577 Hypothetical protein CBG01743 [Caenorhabditis briggsae] 5.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500628.1 1 12-34
E04A4.6 1 12-34
SNAP00000038152 2 12-34,450-469
GENEFINDER00000038157 2 12-29,388-407
Sequence
Target Sequence 
>C. ELEGANS:181207_AT
cattcgctgttccaacactaggcaactgctattctggatctattgcaccatctcctgtgt
tcttccttcgatcgatgtcttctgtgtgcacgatttccacaataaattgcgaagatgctc
gtgcaaaagcgagagcattctacgaacaagtttatccatccgtacttgtttcatcgcctt
cagaagatgcacatccagcttccgttgggagagttaatgttacttgggaagaactatcac
cttccacaatatcctgccgtttacctgtgtcctcgttacttcaaatctactattccaagc
aaggatctacaaaaaactatcgagaggttataattgcaggaaactcacagctacttttag
atgatgttccgtatctttctggccaagaaattcgtatgccaatctcaatttcattcacag
aagtcacaccacctccgaagaacatattttcagctttaccttacgttgatattcgactac
ctcacgacttcttctatccatttatgagcacttcaaactactctgctagctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCGCTGTTCCAACACTAGGCAA 159 217 842 Antisense
AGGCAACTGCTATTCTGGATCTATT 267 55 861 Antisense
TTCGATCGATGTCTTCTGTGTGCAC 606 695 908 Antisense
TATCCATCCGTACTTGTTTCATCGC 142 659 994 Antisense
AGAAGATGCACATCCAGCTTCCGTT 106 75 1023 Antisense
CACAATATCCTGCCGTTTACCTGTG 168 195 1086 Antisense
TGTGTCCTCGTTACTTCAAATCTAC 493 555 1107 Antisense
ATATTTTCAGCTTTACCTTACGTTG 46 19 1285 Antisense
TGATATTCGACTACCTCACGACTTC 71 565 1308 Antisense
GACTTCTTCTATCCATTTATGAGCA 426 371 1327 Antisense
GCACTTCAAACTACTCTGCTAGCTT 1 317 1349 Antisense
Sequence Source Affymetrix Proprietary Database