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[181206_at]

Description F52C6.7 /REP_DB=WormBase Gene ID /WP=CE17098 /TR=O44814 /GB=AAB94981.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 31.6
(-0.4)
A 		9.3
(-3)
A 		30.4
(-0.5)
A 		60.8
(3)
A 		52
B 67.3
(0.2)
A 		56.6
(-2.5)
A 		54.7
(-3)
A 		78.5
(3)
A 		24
C 18.2
(-3)
A 		59.1
(-0.9)
A 		40.8
(-1.8)
A 		134.7
(3)
P 		117
avr 39
(-3) 		41.7
(-2.7) 		42
(-2.7) 		91.3
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 58.8
(1.2)
A 		57.9
(1.1)
A 		25.4
(-3)
A 		73.2
(3)
M 		51.6
(0.3)
A 		27.4
(-2.7)
A 		48
B 32.9
(-1.1)
A 		57.5
(1.7)
A 		25.9
(-1.9)
A 		68.5
(3)
A 		16.6
(-3)
A 		64.7
(2.6)
M 		52
C 43.7
(-0.3)
A 		8.1
(-3)
A 		40.8
(-0.5)
A 		86.5
(3)
A 		43.7
(-0.3)
P 		37.1
(-0.8)
M 		78
avr 45.1
(-1.1) 		41.2
(-1.6) 		30.7
(-3) 		76.1
(3) 		37.3
(-2.1) 		43.1
(-1.4) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 11.5
(3)
A 		2
(-3)
A 		8
(0.8)
A 		8.9
(1.4)
A 		10
B 21.4
(3)
A 		14
(-2.1)
A 		12.7
(-3)
A 		16.7
(-0.2)
A 		9
C 6
(-3)
A 		17
(1)
A 		14.2
(-0.1)
A 		22.7
(3)
P 		17
avr 13
(-0.6) 		11
(-3) 		11.6
(-2.3) 		16.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.8
(-0.9)
A 		20.6
(3)
A 		5.5
(-3)
A 		18.6
(2.2)
M 		15.6
(1)
A 		6.7
(-2.5)
A 		15
B 11.4
(-1.3)
A 		19.1
(1.3)
A 		6.3
(-3)
A 		18.1
(1)
A 		6.8
(-2.8)
A 		24.1
(3)
M 		18
C 16.2
(2.5)
A 		2.5
(-3)
A 		10.4
(0.2)
A 		17.4
(3)
A 		14.1
(1.7)
P 		12.4
(1)
M 		15
avr 12.8
(0.1) 		14.1
(0.8) 		7.4
(-3) 		18
(3) 		12.2
(-0.3) 		14.4
(1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5078
Sequence Type Exemplar sequence
Representative Public ID F52C6.7 NCBI
Target Description F52C6.7 /REP_DB=WormBase Gene ID /WP=CE17098 /TR=O44814 /GB=AAB94981.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061720
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005720 ENSEMBL cdna:SNAP chromosome:CEL140:II:1913607:1917954:-1 10/11 None
GENEFINDER00000005742 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1913607:1916378:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061720 7/11 Cross Hyb Matching Probes None
F52C6.7 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1913605-1916377(-) 90.88 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 1.0E-157
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 1.0E-145
blast NP_494157 F59H6.10 [Caenorhabditis elegans] 1.0E-141
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 1.0E-88
blast AAF39858 Hypothetical protein F59H6.10 [Caenorhabditis elegans] 8.0E-88
blast AAF39859 Hypothetical protein F59H6.11 [Caenorhabditis elegans] ref|NP_494158.1| F59H6.11 [Caenorhabditis elegans] 9.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.1E-39
Pfam IPR002083 EMBL-EBI MATH 2.7E-25
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.3E-39
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.7E-31
Pfam IPR002083 EMBL-EBI MATH 1.1E-40
Pfam IPR000210 EMBL-EBI BTB/POZ domain 6.5E-30
Sequence
Target Sequence 
>C. ELEGANS:181206_AT
atttcctcgcgaaatttcattcctcgcctcccactccacttacttcgagtctcttcttct
cggaaatttcgcagaagccgacaaatcagaagtcacccttcaggacatcaactcctcgga
ttttcagaacctcctggaggttctatacggagaacccgctattgatgatgaaaccatcga
tggaattcttcatttggccgacttcttccatatgcctgttgtaattcgaaagtgtgaaga
gtttttgatcgataaatccgagaaaatgatgagagacgtgctgaaaatcgccaagaagta
tcggctggagactttgaaggcaagaatcacgcccggctcctcatttgggcttgatctaca
aaaaatgcgcggagaagagacgcgcaggagcgcatctctttcaaaaatcaataccgccga
tgaaatcaaggcggcgatggcaggcgatctttcagaaatggatcaagctgtcgtgcatgc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCTCGCGAAATTTCATTCCTC 609 15 522 Antisense
GGACATCAACTCCTCGGATTTTCAG 596 525 624 Antisense
CGGATTTTCAGAACCTCCTGGAGGT 404 243 638 Antisense
ACGGAGAACCCGCTATTGATGATGA 374 95 668 Antisense
GATGGAATTCTTCATTTGGCCGACT 333 403 700 Antisense
ACTTCTTCCATATGCCTGTTGTAAT 564 103 722 Antisense
TGAAGGCAAGAATCACGCCCGGCTC 499 573 836 Antisense
CTCCTCATTTGGGCTTGATCTACAA 446 235 858 Antisense
CGCAGGAGCGCATCTCTTTCAAAAA 64 255 904 Antisense
GCGATGGCAGGCGATCTTTCAGAAA 318 289 955 Antisense
AATGGATCAAGCTGTCGTGCATGCT 175 163 978 Antisense
Sequence Source Affymetrix Proprietary Database