[Home] | [Total List]

[181205_at]

Description C54E10.6 /REP_DB=WormBase Gene ID /WP=CE15734 /TR=O45316 /GB=CAB03999.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 12      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 19      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 134.8
(-2.5)
P 		216.8
(3)
P 		127.5
(-3)
P 		209.3
(2.5)
P 		89
B 158.4
(-2.3)
P 		149.8
(-2.9)
P 		148.9
(-3)
P 		229
(3)
P 		80
C 160.5
(-2)
P 		155.4
(-2.1)
P 		127.1
(-3)
P 		326.2
(3)
P 		199
avr 151.2
(-2.2) 		174
(-1) 		134.5
(-3) 		254.8
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 313.7
(1.8)
P 		254.7
(0.5)
P 		366.8
(3)
P 		227.2
(-0.2)
P 		175.4
(-1.3)
P 		102.4
(-3)
P 		264
B 301.7
(0.4)
P 		358.5
(1.9)
P 		399.7
(3)
P 		179.9
(-2.9)
P 		260.8
(-0.7)
P 		176.7
(-3)
P 		223
C 311.8
(3)
P 		310.2
(2.9)
P 		223.8
(-0.3)
P 		262.3
(1.1)
P 		152.7
(-3)
P 		175.5
(-2.1)
P 		159
avr 309.1
(2.3) 		307.8
(2.3) 		330.1
(3) 		223.1
(-0.6) 		196.3
(-1.5) 		151.5
(-3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 49.1
(3)
P 		47.1
(2.4)
P 		33.3
(-2.1)
P 		30.6
(-3)
P 		19
B 50.5
(3)
P 		37
(-2.1)
P 		34.5
(-3)
P 		48.8
(2.4)
P 		16
C 53.1
(1.9)
P 		44.7
(-2.8)
P 		44.3
(-3)
P 		55
(3)
P 		11
avr 50.9
(3) 		42.9
(-0.6) 		37.4
(-3) 		44.8
(0.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 57.8
(0)
P 		90.6
(3)
P 		79.9
(2)
P 		57.6
(-0)
P 		52.9
(-0.4)
P 		24.9
(-3)
P 		66
B 105
(1.8)
P 		119.3
(3)
P 		97.1
(1.1)
P 		47.7
(-3)
P 		106
(1.9)
P 		65.9
(-1.5)
P 		72
C 115.6
(3)
P 		94.7
(1.1)
P 		57
(-2.3)
P 		52.7
(-2.7)
P 		49.4
(-3)
P 		58.8
(-2.1)
P 		66
avr 92.8
(2) 		101.5
(3) 		78
(0.3) 		52.7
(-2.7) 		69.4
(-0.7) 		49.9
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12632
Sequence Type Exemplar sequence
Representative Public ID C54E10.6 NCBI
Target Description C54E10.6 /REP_DB=WormBase Gene ID /WP=CE15734 /TR=O45316 /GB=CAB03999.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075274 NCBI Caenorhabditis elegans C54E10.6 (C54E10.6) mRNA, complete cds. 11/11 None
SNAP00000040256 ENSEMBL cdna:SNAP chromosome:CEL140:V:18810683:18811234:-1 11/11 None
GENEFINDER00000040264 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18810683:18811234:-1 11/11 None
C54E10.6 ENSEMBL cdna:known chromosome:CEL140:V:18810653:18811234:-1 gene:C54E10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18810682-18811234(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54E10.6
Entrez Gene 180228 Entrez gene
SwissProt O45316 EMBL-EBI
WormBase CE15734 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03999 Hypothetical protein C54E10.6 [Caenorhabditis elegans] ref|NP_507675.1| C54E10.6 [Caenorhabditis elegans] 4.0E-57
Sequence
Target Sequence 
>C. ELEGANS:181205_AT
gtctgaaatctccataaaacgtgcacatgaaaacgaaaaagatgcagaggaagatatgga
gccagcaactaaaaaaattaaatctgatgacgtcacagaggagcaggagaagcctgaaat
tgtggagaaagctgaaaaagtgaagagcatgaaaaaggaagaagctggcagcctgaaatc
accacccaacgatgaaatggagtcagaattcacacatgtgctcaatgagctctcaaaaca
gaaagagactatcaaaaaactgctggacgatttgagagcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGAAATCTCCATAAAACGTGCA 487 469 15 Antisense
AATCTCCATAAAACGTGCACATGAA 532 167 21 Antisense
GAGGAAGATATGGAGCCAGCAACTA 346 405 61 Antisense
GATGACGTCACAGAGGAGCAGGAGA 351 411 100 Antisense
GGAGCAGGAGAAGCCTGAAATTGTG 221 519 114 Antisense
GAAGCTGGCAGCCTGAAATCACCAC 204 343 175 Antisense
GAAATCACCACCCAACGATGAAATG 108 363 189 Antisense
TGGAGTCAGAATTCACACATGTGCT 440 549 212 Antisense
GAATTCACACATGTGCTCAATGAGC 295 325 220 Antisense
GAGACTATCAAAAAACTGCTGGACG 514 391 259 Antisense
ACTGCTGGACGATTTGAGAGCGGAC 336 97 273 Antisense
Sequence Source Affymetrix Proprietary Database