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[181204_at]

Description F48E8.2 /REP_DB=WormBase Gene ID /WP=CE01954 /TR=Q09395 /GB=AAC46540.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 29      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 83.2
(1.8)
A 		61.3
(-3)
A 		83.4
(1.8)
A 		88.7
(3)
A 		27
B 69.6
(3)
A 		60.2
(1.3)
A 		36.8
(-3)
A 		65.3
(2.2)
A 		33
C 71.2
(-2)
A 		101.2
(3)
A 		65.3
(-3)
A 		68.3
(-2.5)
A 		36
avr 74.7
(3) 		74.2
(2.8) 		61.8
(-3) 		74.1
(2.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 40.7
(-3)
A 		90.4
(3)
A 		54.6
(-1.3)
A 		49.9
(-1.9)
A 		53.7
(-1.4)
A 		41.6
(-2.9)
A 		50
B 43.3
(-2.7)
A 		77.8
(1.1)
A 		48.4
(-2.1)
A 		40.3
(-3)
A 		64.3
(-0.4)
A 		95.3
(3)
A 		55
C 70.3
(1.4)
A 		63.4
(0.9)
A 		73.3
(1.6)
A 		91.6
(3)
A 		11.3
(-3)
A 		68.7
(1.3)
A 		80
avr 51.4
(-1.5) 		77.2
(3) 		58.8
(-0.2) 		60.6
(0.1) 		43.1
(-3) 		68.5
(1.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 30.3
(3)
A 		13.3
(-2.9)
A 		21.8
(0.1)
A 		13
(-3)
A 		17
B 22.2
(3)
A 		14.9
(-0.2)
A 		8.5
(-3)
A 		13.9
(-0.6)
A 		14
C 23.6
(1.1)
A 		29.1
(3)
A 		22.8
(0.9)
A 		11.5
(-3)
A 		18
avr 25.4
(3) 		19.1
(0) 		17.7
(-0.7) 		12.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.5
(-3)
A 		32.2
(3)
A 		11.9
(-1.9)
A 		12.7
(-1.7)
A 		16.2
(-0.9)
A 		10.1
(-2.4)
A 		25
B 15.1
(-1.9)
A 		25.9
(0.7)
A 		11.7
(-2.8)
A 		10.7
(-3)
A 		26.1
(0.7)
A 		35.5
(3)
A 		25
C 26
(3)
A 		19.3
(1.2)
A 		18.7
(1)
A 		18.4
(1)
A 		3.7
(-3)
A 		23
(2.2)
A 		22
avr 16.2
(-1.8) 		25.8
(3) 		14.1
(-2.9) 		13.9
(-3) 		15.3
(-2.3) 		22.9
(1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7682
Sequence Type Exemplar sequence
Representative Public ID F48E8.2 NCBI
Target Description F48E8.2 /REP_DB=WormBase Gene ID /WP=CE01954 /TR=Q09395 /GB=AAC46540.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065764 NCBI Caenorhabditis elegans F48E8.2 (F48E8.2) mRNA, complete cds. 11/11 None
SNAP00000003643 ENSEMBL cdna:SNAP chromosome:CEL140:III:5464353:5467500:1 11/11 None
F48E8.2 ENSEMBL cdna:known chromosome:CEL140:III:5464353:5467364:1 gene:F48E8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003651 7/11 Cross Hyb Matching Probes None
GENEFINDER00000003653 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5464351-5467363(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48E8.2
Entrez Gene 175752 Entrez gene
WormBase CE01954 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498165 F48E8.2 [Caenorhabditis elegans] 0.0
blast AAC46540 Hypothetical protein F48E8.2 [Caenorhabditis elegans] 0.0
blast CAE61353 Hypothetical protein CBG05193 [Caenorhabditis briggsae] 1.0E-157
Sequence
Target Sequence 
>C. ELEGANS:181204_AT
gacagtggtggagacatttacgcaaaatgatgtggagagtgtggagggttcagttaagaa
aatatacgaggaaaaagcgaaaccctcccaaccacttgcttcgattctcaaaaagactgt
atcaccacagaaaaagatgaaattggaagaagaagaagaagctccgaaagtggtacatat
ggaaacagatgaagctactgctgaagaagagacaaatcccattaaacgagcagcaatgga
tagactgaaagaaattgaaaagaatgatgaattactgtatgatgatcaagaagatgaaga
caatgaaaaatgggtcaaagagcatcggaaaatcgctagaggatcagatgctcccggaag
ttcagaagccgatggagttctctcgtgtcccggatgtatggttgagctcactagagattg
tcagcgtcacgagatttacaaaacgcaatacagggcaatgttcgtcacaaattgccagct
ggacggtgagaaaatggcaatagaaaagaccggaaaagatcgtcgccgcgaccggcaaaa
ggccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTGGTGGAGACATTTACGCAA 422 367 726 Antisense
GACAAATCCCATTAAACGAGCAGCA 133 367 936 Antisense
ATCGCTAGAGGATCAGATGCTCCCG 116 37 1057 Antisense
GATGCTCCCGGAAGTTCAGAAGCCG 530 413 1072 Antisense
GAAGCCGATGGAGTTCTCTCGTGTC 265 345 1090 Antisense
GTCCCGGATGTATGGTTGAGCTCAC 613 475 1112 Antisense
CTCACTAGAGATTGTCAGCGTCACG 571 227 1132 Antisense
GCAATACAGGGCAATGTTCGTCACA 529 319 1170 Antisense
GTTCGTCACAAATTGCCAGCTGGAC 322 443 1185 Antisense
AAGACCGGAAAAGATCGTCGCCGCG 326 151 1231 Antisense
TCGCCGCGACCGGCAAAAGGCCAAA 375 599 1248 Antisense
Sequence Source Affymetrix Proprietary Database