[Home] | [Total List]

[181203_at]

Description ZC395.4 /REP_DB=WormBase Gene ID /WP=CE01440 /TR=Q9GYG0 /GB=AAG00036.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 7.4
(-2.6)
A 		33.5
(-0.6)
A 		2.1
(-3)
A 		79.5
(3)
P 		77
B 14.4
(1.5)
A 		4.8
(-3)
A 		5.3
(-2.8)
A 		17.5
(3)
A 		13
C 21.2
(-2.6)
A 		22.7
(-2.3)
A 		19.7
(-3)
A 		44.2
(3)
A 		25
avr 14.3
(-2.2) 		20.3
(-1.2) 		9
(-3) 		47.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 43.6
(3)
A 		19.4
(-0.5)
A 		32.9
(1.4)
A 		2.4
(-3)
A 		23.8
(0.1)
A 		33.5
(1.5)
A 		41
B 26.7
(0.9)
A 		14.6
(-1.1)
A 		3.3
(-3)
A 		14.3
(-1.2)
A 		23.1
(0.3)
A 		39.2
(3)
A 		36
C 14.9
(-2.4)
A 		15.3
(-2.3)
A 		11.5
(-3)
A 		33.4
(0.8)
A 		25
(-0.6)
A 		45.9
(3)
A 		34
avr 28.4
(0.2) 		16.4
(-2.9) 		15.9
(-3) 		16.7
(-2.8) 		24
(-0.9) 		39.5
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.7
(-1.8)
A 		7.3
(0.7)
A 		0.5
(-3)
A 		11.6
(3)
P 		11
B 4.6
(3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		3.7
(1.4)
A 		3
C 7
(0)
A 		6.5
(-3)
A 		6.9
(-0.6)
A 		7.5
(3)
A 		1
avr 4.8
(-0.6) 		5
(-0.3) 		2.9
(-3) 		7.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8
(2.9)
A 		6.9
(2)
A 		7.2
(2.3)
A 		0.6
(-3)
A 		7.2
(2.3)
A 		8.1
(3)
A 		8
B 9.3
(0.7)
A 		4.8
(-1.3)
A 		0.8
(-3)
A 		3.8
(-1.7)
A 		9.4
(0.7)
A 		14.6
(3)
A 		14
C 5.5
(-1.8)
A 		4.7
(-2.1)
A 		2.9
(-3)
A 		6.7
(-1.2)
A 		8.1
(-0.5)
A 		15.4
(3)
A 		13
avr 7.6
(-0.4) 		5.5
(-1.7) 		3.6
(-3) 		3.7
(-2.9) 		8.2
(0) 		12.7
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7216
Sequence Type Exemplar sequence
Representative Public ID ZC395.4 NCBI
Target Description ZC395.4 /REP_DB=WormBase Gene ID /WP=CE01440 /TR=Q9GYG0 /GB=AAG00036.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065724 NCBI Caenorhabditis elegans ZC395.4 (ZC395.4) mRNA, complete cds. 11/11 None
SNAP00000016750 ENSEMBL cdna:SNAP chromosome:CEL140:III:5270218:5270968:1 11/11 None
GENEFINDER00000016763 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5270218:5270968:1 11/11 None
ZC395.4 ENSEMBL cdna:known chromosome:CEL140:III:5270218:5270968:1 gene:ZC395.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5270216-5270967(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC395.4
Entrez Gene 191151 Entrez gene
SwissProt Q9GYG0 EMBL-EBI
WormBase CE01440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG00036 Hypothetical protein ZC395.4 [Caenorhabditis elegans] ref|NP_498125.1| ZC395.4 [Caenorhabditis elegans] 2.0E-81
blast CAE73684 Hypothetical protein CBG21194 [Caenorhabditis briggsae] 7.0E-20
Sequence
Target Sequence 
>C. ELEGANS:181203_AT
agaagaatctatcgactcctggtactggtggaagtgttaatcccgaaatgaagtcaattt
cacattcgacaacagctcaatcgggagagaagggagcaagcaaaatggcaaaagttccgt
ccaaggagaagagcaagggaccaaggcaaagtgatcgtgatgcaaaggatgaacacaacg
aggcggtgtctcaactcaagaagattgccgaaaaagcttcagaaatgtcacatggaccat
ctgtagctccaccaagaaaacttgacgcgaaacgcactgtgaccggaatgaaggaaagca
aagatcccgagtatgtgacgctggatgacgattttccgaaattcgagaaagcaatactga
agggcaactcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGAATCTATCGACTCCTGGTAC 649 73 59 Antisense
ATCGACTCCTGGTACTGGTGGAAGT 465 35 69 Antisense
AATTTCACATTCGACAACAGCTCAA 387 175 114 Antisense
AATGGCAAAAGTTCCGTCCAAGGAG 333 157 162 Antisense
GGGACCAAGGCAAAGTGATCGTGAT 279 493 195 Antisense
ACGAGGCGGTGTCTCAACTCAAGAA 83 93 236 Antisense
GTCACATGGACCATCTGTAGCTCCA 667 463 285 Antisense
TGACGCGAAACGCACTGTGACCGGA 675 567 321 Antisense
AAAGATCCCGAGTATGTGACGCTGG 550 121 358 Antisense
TGTGACGCTGGATGACGATTTTCCG 77 555 372 Antisense
AAAGCAATACTGAAGGGCAACTCTA 163 119 406 Antisense
Sequence Source Affymetrix Proprietary Database