[Home] | [Total List]

[181200_at]

Description T09B4.2 /REP_DB=WormBase Gene ID /WP=CE13459 /TR=O02163 /GB=AAB53005.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 82      6grp_total > 74      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 283.1
(0.5)
P 		283.5
(0.5)
P 		245.3
(-3)
P 		310.9
(3)
P 		66
B 336.9
(3)
P 		293.9
(-0.8)
P 		284.2
(-1.6)
P 		268.2
(-3)
P 		69
C 259.6
(0.4)
P 		198
(-3)
P 		308.3
(3)
P 		269
(0.9)
P 		110
avr 293.2
(3) 		258.5
(-3) 		279.3
(0.6) 		282.7
(1.2) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 313.7
(-3)
P 		338
(-0.8)
P 		380.3
(3)
P 		357.6
(1)
P 		375.4
(2.6)
P 		321
(-2.3)
P 		67
B 226.4
(-3)
P 		327
(-0.3)
P 		438.2
(2.6)
P 		388.9
(1.3)
P 		376.4
(1)
P 		453.8
(3)
P 		227
C 254
(-3)
P 		287.9
(-2)
P 		374.8
(0.7)
P 		439.3
(2.7)
P 		342.1
(-0.3)
P 		450.4
(3)
P 		196
avr 264.7
(-3) 		317.6
(-0.8) 		397.8
(2.6) 		395.3
(2.5) 		364.6
(1.2) 		408.4
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 103.1
(3)
P 		61.5
(-1.3)
P 		64.1
(-1.1)
P 		45.5
(-3)
P 		58
B 107.4
(3)
P 		72.6
(-1.2)
P 		65.9
(-2)
P 		57.2
(-3)
P 		50
C 85.9
(0.9)
P 		56.9
(-1.9)
P 		107.5
(3)
P 		45.4
(-3)
P 		62
avr 98.8
(3) 		63.7
(-1.3) 		79.2
(0.6) 		49.4
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 57.8
(-3)
P 		120.2
(3)
P 		82.8
(-0.6)
P 		90.7
(0.2)
P 		113.3
(2.3)
P 		78.2
(-1)
P 		62
B 78.8
(-3)
P 		108.8
(-1)
P 		106.4
(-1.2)
P 		103
(-1.4)
P 		152.9
(1.9)
P 		169.2
(3)
P 		90
C 94.1
(-2.4)
P 		87.9
(-3)
P 		95.4
(-2.3)
P 		88.3
(-3)
P 		110.7
(-0.8)
P 		150.8
(3)
P 		63
avr 76.9
(-3) 		105.6
(0.1) 		94.9
(-1.1) 		94
(-1.2) 		125.6
(2.2) 		132.7
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.635
Sequence Type Exemplar sequence
Representative Public ID T09B4.2 NCBI
Target Description T09B4.2 /REP_DB=WormBase Gene ID /WP=CE13459 /TR=O02163 /GB=AAB53005.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059381(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059381 NCBI Caenorhabditis elegans T09B4.2 (T09B4.2) mRNA, complete cds. 11/11 None
T09B4.2 ENSEMBL cdna:known chromosome:CEL140:I:6192222:6193441:1 gene:T09B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6192150-6193299(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09B4.2
Entrez Gene 172304 Entrez gene
SwissProt O02163 EMBL-EBI
WormBase CE13459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53005 Hypothetical protein T09B4.2 [Caenorhabditis elegans] ref|NP_491782.1| T09B4.2 [Caenorhabditis elegans] 1.0E-156
blast CAE67130 Hypothetical protein CBG12552 [Caenorhabditis briggsae] 4.0E-84
blast CAB05124 Hypothetical protein Y37A1B.15 [Caenorhabditis elegans] emb|CAA19497.3| Hypothetical protein Y37A1B.15 [Caenorhabditis elegans] ref|NP_502681.2| GEX Interacting protein family member (gei-18) [Caenorhabditis elegans] 2.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491782.1 1 84-101
T09B4.2 1 84-101
Sequence
Target Sequence 
>C. ELEGANS:181200_AT
aaatcagtccgatctgtcatcaagaacgagtttcctacaatttcgaaagaaaatcgggat
ctcttaagactaatcgggcagaaaatctatttggaaccagaaaatcatgctccgttggtt
gttcttgttgggggaacaccggccaaacaaattgccgaagctgtgaatcgagctgttcaa
gatgctaaaagtgatgagcatactacggcaggaaaatcatcaattagagtggaaagtgac
actgatagagccgagttgcatgcgaatttgcaggaaatcctcggacccgctcttatttca
caatcatcacctcgaacagctgtgattttggatgtagacctgctaaaatgggatgcagtt
cttgttcttcatgcgttctcagatcacggaaaatatccagttcccaaaacaatacttttt
ctgactgtttcttcacaacaagattcaacgatggacattgccaacacaagttgtgatgag
aaaatggtccaatttctaacgaaacgctggattgagaacggcggctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAGTCCGATCTGTCATCAAGA 354 117 361 Antisense
GGGATCTCTTAAGACTAATCGGGCA 95 495 416 Antisense
ATCATGCTCCGTTGGTTGTTCTTGT 607 29 464 Antisense
GATAGAGCCGAGTTGCATGCGAATT 50 425 604 Antisense
ATTTGCAGGAAATCCTCGGACCCGC 706 13 626 Antisense
CCGCTCTTATTTCACAATCATCACC 151 263 647 Antisense
CACAATCATCACCTCGAACAGCTGT 177 195 659 Antisense
AATGGGATGCAGTTCTTGTTCTTCA 589 163 707 Antisense
GTTCTTCATGCGTTCTCAGATCACG 282 443 724 Antisense
CAATACTTTTTCTGACTGTTTCTTC 586 179 770 Antisense
GCTGGATTGAGAACGGCGGCTCTTC 38 295 866 Antisense
Sequence Source Affymetrix Proprietary Database