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[181199_at]

Description C18H7.1 /REP_DB=WormBase Gene ID /WP=CE27718 /TR=Q9GZF5 /GB=AAF98615.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      6grp_highest_nonorm > 94      6grp_total > 79      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1326
1 2 3 4 range
A 1330.7
(3)
P 		78.4
(-2.7)
A 		16.1
(-3)
A 		1076.9
(1.8)
P 		1315
B 1340.3
(3)
P 		43.2
(-2.9)
A 		14.6
(-3)
A 		1194.9
(2.3)
P 		1326
C 1258.8
(3)
P 		80.1
(-2.7)
A 		24.4
(-3)
A 		1159.3
(2.5)
P 		1234
avr 1309.9
(3) 		67.2
(-2.8) 		18.4
(-3) 		1143.7
(2.2) 		1292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1366
1 2 3 4 5 6 range
A 412.4
(-2)
P 		274.6
(-2.6)
P 		176.8
(-3)
P 		241.3
(-2.7)
P 		742.7
(-0.5)
P 		1524.5
(3)
P 		1348
B 403.1
(-1.7)
P 		218.6
(-2.7)
P 		158.4
(-3)
P 		229.8
(-2.6)
P 		847.1
(0.6)
P 		1320.1
(3)
P 		1162
C 488.6
(-1.6)
P 		262.3
(-2.7)
P 		211
(-3)
P 		224.5
(-2.9)
P 		919
(0.5)
P 		1439.6
(3)
P 		1229
avr 434.7
(-1.8) 		251.8
(-2.7) 		182.1
(-3) 		231.9
(-2.8) 		836.3
(0.2) 		1428.1
(3) 		1246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 484.5
(3)
P 		17
(-2.8)
A 		4.2
(-3)
A 		157.6
(-1.1)
P 		480
B 427.4
(3)
P 		10.7
(-2.9)
A 		3.4
(-3)
A 		254.6
(0.6)
P 		424
C 416.7
(3)
P 		23
(-2.8)
A 		8.5
(-3)
A 		195.5
(-0.3)
P 		408
avr 442.9
(3) 		16.9
(-2.8) 		5.4
(-3) 		202.6
(-0.3) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 76
(-2.3)
P 		97.6
(-1.9)
P 		38.5
(-3)
P 		61.2
(-2.6)
P 		224.1
(0.3)
P 		371.2
(3)
P 		333
B 140.3
(-1.7)
P 		72.8
(-2.5)
P 		38.5
(-3)
P 		60.9
(-2.7)
P 		344.2
(1)
P 		492.3
(3)
P 		454
C 181.1
(-1.1)
P 		80
(-2.5)
P 		53.7
(-2.9)
P 		45.2
(-3)
P 		297.4
(0.5)
P 		481.9
(3)
P 		437
avr 132.5
(-1.7) 		83.5
(-2.4) 		43.6
(-3) 		55.8
(-2.8) 		288.6
(0.6) 		448.5
(3) 		405
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181199_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10891
Sequence Type Exemplar sequence
Representative Public ID C18H7.1 NCBI
Target Description C18H7.1 /REP_DB=WormBase Gene ID /WP=CE27718 /TR=Q9GZF5 /GB=AAF98615.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067558 NCBI Caenorhabditis elegans C18H7.1 (C18H7.1) mRNA, complete cds. 11/11 None
SNAP00000009158 ENSEMBL cdna:SNAP chromosome:CEL140:IV:618952:620738:1 11/11 None
GENEFINDER00000009162 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:618976:620738:1 11/11 None
C18H7.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:615544:621057:1 gene:C18H7.1 11/11 None
C18H7.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:615567:621120:1 gene:C18H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:616366-620744(+) 91.53 92.77
Public Domain and Genome References
Gene Title
Ensembl C18H7.1
Entrez Gene 176888 Entrez gene
SwissProt Q9GZF5 EMBL-EBI
WormBase CE27718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98615 Hypothetical protein C18H7.1 [Caenorhabditis elegans] ref|NP_499959.1| C18H7.1 [Caenorhabditis elegans] 0.0
blast CAE73756 Hypothetical protein CBG21291 [Caenorhabditis briggsae] 0.0
blast AAF98615 Hypothetical protein C18H7.1 [Caenorhabditis elegans] ref|NP_499959.1| C18H7.1 [Caenorhabditis elegans] 1.0E-164
blast AAF98615 Hypothetical protein C18H7.1 [Caenorhabditis elegans] ref|NP_499959.1| C18H7.1 [Caenorhabditis elegans] 1.0E-162
blast T32949 hypothetical protein C05G6.3 - Caenorhabditis elegans 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.1E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.4E-35
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 1.0E-7
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.4E-35
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.8E-7
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.4E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499959.1 1 5-27
C18H7.1.1 1 5-27
C18H7.1.2 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:181199_AT
agatcctatcactggttgcgaactagaccttgttcttgtcctcgacttctctacaaccac
tgacccagtgtataattcgtacaaagatctcagcaagcgattggtgtctcagttaaagat
tggacctcattatacacaggtcgccgcggtcacattcgccactgtcggacggacgagagt
acgtttcaatctgaaaaagtatcagacgcaggaagaagttctcagaggaattgataactt
gaaatcgagaggtggaactactgctattggtgccggaatcgagaaagccctgacacaact
cgacgagtccgagggtgcccgacccggaattgcaacaaaagtgatggttgtattcaccga
tggatggagtaataagggtcctgatccggaaaaaagagcccgagatgcagtgagctctgg
ttttgagatgtatacagtggcttatacggcccacactcctggagcagtaaccctaaacaa
cgaaacattgtcggctatctctggtgacgtccatcacacttttacagacgtcacattcca
agctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCCTATCACTGGTTGCGAACTA 108 67 1029 Antisense
GAACTAGACCTTGTTCTTGTCCTCG 555 347 1048 Antisense
GGAACTACTGCTATTGGTGCCGGAA 121 529 1282 Antisense
GGAATCGAGAAAGCCCTGACACAAC 360 533 1303 Antisense
CAACTCGACGAGTCCGAGGGTGCCC 203 187 1324 Antisense
GTGCCCGACCCGGAATTGCAACAAA 2 479 1343 Antisense
AGCCCGAGATGCAGTGAGCTCTGGT 320 83 1425 Antisense
TACAGTGGCTTATACGGCCCACACT 357 643 1461 Antisense
AAACATTGTCGGCTATCTCTGGTGA 171 129 1511 Antisense
TGGTGACGTCCATCACACTTTTACA 684 551 1530 Antisense
TACAGACGTCACATTCCAAGCTCTT 605 641 1551 Antisense
Sequence Source Affymetrix Proprietary Database