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[181198_at]

Description E04A4.2 /REP_DB=WormBase Gene ID /WP=CE16963 /TR=O44474 /GB=AAB92037.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 7.1
(-3)
A 		26.2
(0.1)
A 		9.4
(-2.6)
A 		43.7
(3)
A 		37
B 16.7
(-1.3)
A 		4.4
(-3)
A 		10.8
(-2.1)
A 		46.7
(3)
A 		42
C 1.8
(-3)
A 		16.3
(-2)
A 		2.9
(-2.9)
A 		86.5
(3)
P 		85
avr 8.5
(-2.9) 		15.6
(-2.1) 		7.7
(-3) 		59
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 11.5
(-1.6)
A 		43.9
(3)
A 		16.8
(-0.8)
A 		1.4
(-3)
A 		4.8
(-2.5)
A 		26.6
(0.6)
A 		43
B 2.6
(-3)
A 		5.1
(-2.4)
A 		4.4
(-2.6)
A 		4.4
(-2.6)
A 		3.4
(-2.8)
A 		26.8
(3)
A 		24
C 5.4
(-1.3)
A 		8.1
(0)
A 		1.8
(-3)
A 		14.2
(3)
A 		2.4
(-2.7)
A 		9.6
(0.8)
A 		12
avr 6.5
(-2) 		19
(2.3) 		7.7
(-1.6) 		6.7
(-1.9) 		3.5
(-3) 		21
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.6
(-2.8)
A 		5.7
(1.9)
A 		2.5
(-3)
A 		6.4
(3)
A 		4
B 5.3
(-0.1)
A 		1.1
(-3)
A 		2.5
(-2)
A 		9.9
(3)
A 		9
C 0.6
(-3)
A 		4.7
(-1.2)
A 		1
(-2.8)
A 		14.6
(3)
P 		14
avr 2.8
(-2.4) 		3.8
(-1.7) 		2
(-3) 		10.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.1
(-2.3)
A 		15.6
(3)
A 		3.7
(-1.7)
A 		0.4
(-3)
A 		1.4
(-2.6)
A 		6.5
(-0.6)
A 		15
B 0.9
(-3)
A 		1.7
(-2.5)
A 		1.1
(-2.9)
A 		1.2
(-2.8)
A 		1.4
(-2.7)
A 		10
(3)
A 		9
C 2
(0.4)
A 		2.5
(1.5)
A 		0.4
(-3)
A 		2.8
(2.1)
A 		0.8
(-2.1)
A 		3.2
(3)
A 		3
avr 1.7
(-2.4) 		6.6
(3) 		1.7
(-2.4) 		1.5
(-2.7) 		1.2
(-3) 		6.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10602
Sequence Type Exemplar sequence
Representative Public ID E04A4.2 NCBI
Target Description E04A4.2 /REP_DB=WormBase Gene ID /WP=CE16963 /TR=O44474 /GB=AAB92037.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068223 NCBI Caenorhabditis elegans E04A4.2 (E04A4.2) mRNA, complete cds. 11/11 None
SNAP00000038149 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4735229:4735789:1 11/11 None
GENEFINDER00000038155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4730627:4738840:1 9/11 None
E04A4.2 ENSEMBL cdna:known chromosome:CEL140:IV:4734752:4735899:1 gene:E04A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4734757-4735905(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04A4.2
Entrez Gene 184033 Entrez gene
SwissProt O44474 EMBL-EBI
WormBase CE16963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 1.0E-170
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 1.0E-119
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 1.0E-104
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 6.0E-91
blast AAK84524 Hypothetical protein F25G6.1 [Caenorhabditis elegans] ref|NP_505211.3| F25G6.1 [Caenorhabditis elegans] 3.0E-86
blast AAK71385 Hypothetical protein M116.4 [Caenorhabditis elegans] ref|NP_501430.1| M116.4 [Caenorhabditis elegans] 2.0E-36
blast AAK71385 Hypothetical protein M116.4 [Caenorhabditis elegans] ref|NP_501430.1| M116.4 [Caenorhabditis elegans] 4.0E-34
blast AAO91704 Hypothetical protein R08C7.13 [Caenorhabditis elegans] ref|NP_001023331.1| R08C7.13 [Caenorhabditis elegans] 6.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038155 1 926-948
Sequence
Target Sequence 
>C. ELEGANS:181198_AT
aagtttaccacacgtatctttcagaatctcaagggttcttattatcaaaaaggtctgaaa
acgttttctctccaatctgattcagttgacctgatcgccaacccatttgacgatccgata
caaatgaatgcagttttatgccaaaacctacacgaaacttcgttgaaatggttttttaaa
gcacaacctgaagacttattgatatccaattctcgttatctgtcgataagcgaagacatg
aattcaaagaaggtcaacctatttttgaaacattggattcacggatccaacaagagaatg
gaatattttgatgtgtgtttccgagttgttaggtttaatgatgatgttctcaaagttctc
ttcaagaacctggattactgtattgcacctgtggaaagagaattattggttcaaccacct
ggagaaaaggaacaaattgtcaaaggaggatatgatgtgagacgaatggatggaacagta
gcaactattattgtagatcacattcaatcactgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTACCACACGTATCTTTCAGA 358 155 97 Antisense
GAATCTCAAGGGTTCTTATTATCAA 204 329 120 Antisense
TGAAAACGTTTTCTCTCCAATCTGA 211 571 152 Antisense
GATTCAGTTGACCTGATCGCCAACC 232 431 175 Antisense
CCAACCCATTTGACGATCCGATACA 401 273 194 Antisense
ATGCCAAAACCTACACGAAACTTCG 301 35 234 Antisense
TATCCAATTCTCGTTATCTGTCGAT 592 657 299 Antisense
GATGTGTGTTTCCGAGTTGTTAGGT 55 409 406 Antisense
GATGATGTTCTCAAAGTTCTCTTCA 243 411 436 Antisense
ATTGGTTCAACCACCTGGAGAAAAG 378 1 501 Antisense
TGTAGATCACATTCAATCACTGTTG 395 559 588 Antisense
Sequence Source Affymetrix Proprietary Database