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[181197_at]

Description C24G6.3 /REP_DB=WormBase Gene ID /WP=CE17459 /TR=O76384 /GB=AAC19216.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 73      6grp_total > 0      4grp_total > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 533.7
(3)
P 		393.9
(-0.9)
P 		420.7
(-0.2)
P 		320.3
(-3)
P 		213
B 492.2
(3)
P 		304.9
(-3)
P 		326.5
(-2.3)
P 		318.1
(-2.6)
P 		187
C 367.9
(2.9)
P 		310.6
(-1.9)
P 		368.5
(3)
P 		297.3
(-3)
P 		71
avr 464.6
(3) 		336.5
(-2) 		371.9
(-0.6) 		311.9
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 453.8
(-1.1)
P 		508.1
(0.5)
P 		386.6
(-3)
P 		592.2
(3)
P 		593.6
(3)
P 		549.3
(1.7)
P 		207
B 433.4
(-2.4)
P 		535.6
(3)
P 		466.6
(-0.6)
P 		516
(2)
P 		515.3
(1.9)
P 		421.8
(-3)
P 		114
C 438.6
(-3)
P 		614.6
(3)
P 		524.9
(-0.1)
P 		469.4
(-2)
P 		463.3
(-2.2)
P 		498.9
(-0.9)
P 		176
avr 441.9
(-3) 		552.8
(3) 		459.4
(-2.1) 		525.9
(1.5) 		524.1
(1.4) 		490
(-0.4) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 194.3
(3)
P 		85.5
(-1.4)
P 		110
(-0.4)
P 		46.9
(-3)
P 		147
B 157
(3)
P 		75.3
(-2.5)
P 		75.7
(-2.5)
P 		67.8
(-3)
P 		89
C 121.8
(2.5)
P 		89.3
(0)
P 		128.4
(3)
P 		50.1
(-3)
P 		78
avr 157.7
(3) 		83.4
(-1.3) 		104.7
(-0.1) 		54.9
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 83.7
(-3)
P 		180.7
(3)
P 		84.2
(-3)
P 		150.2
(1.1)
P 		179.1
(2.9)
P 		133.7
(0.1)
P 		97
B 150.8
(-0.7)
P 		178.3
(1.1)
P 		113.3
(-3)
P 		136.7
(-1.5)
P 		209.4
(3)
P 		157.3
(-0.3)
P 		96
C 162.6
(1.4)
P 		187.5
(3)
P 		133.6
(-0.5)
P 		94.4
(-3)
P 		149.9
(0.6)
P 		167
(1.7)
P 		93
avr 132.4
(-1.2) 		182.2
(3) 		110.4
(-3) 		127.1
(-1.6) 		179.5
(2.8) 		152.7
(0.5) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12332
Sequence Type Exemplar sequence
Representative Public ID C24G6.3 NCBI
Target Description C24G6.3 /REP_DB=WormBase Gene ID /WP=CE17459 /TR=O76384 /GB=AAC19216.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072056 NCBI Caenorhabditis elegans C24G6.3 (C24G6.3) mRNA, complete cds. 11/11 None
SNAP00000033921 ENSEMBL cdna:SNAP chromosome:CEL140:V:5517110:5522897:1 11/11 None
GENEFINDER00000033927 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5516943:5522932:1 11/11 None
C24G6.3 ENSEMBL cdna:known chromosome:CEL140:V:5516943:5523046:1 gene:C24G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5516942-5522897(+) 98.71 100.0
Public Domain and Genome References
Gene Title
Ensembl C24G6.3
Entrez Gene 178935 Entrez gene
SwissProt O76384 EMBL-EBI
WormBase CE29673 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19216 Hypothetical protein C24G6.3 [Caenorhabditis elegans] ref|NP_504457.2| C24G6.3 [Caenorhabditis elegans] 0.0
blast CAE64620 Hypothetical protein CBG09378 [Caenorhabditis briggsae] 0.0
blast XP_534982 PREDICTED: similar to MMS19-like (MET18 homolog, S. cerevisiae) isoform 5 [Canis familiaris] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR010687 EMBL-EBI MMS19, N-terminal 1.0E-80
Pfam IPR010687 EMBL-EBI MMS19, N-terminal 1.1E-55
Pfam IPR010687 EMBL-EBI MMS19, N-terminal 2.5E-76
Sequence
Target Sequence 
>C. ELEGANS:181197_AT
agatatgagaccgcaagccctctatggagacaacgaattttctgtcaaattgttccgatt
ttcaaaagaaaattcgaggagcctggatcccagaagcacgttcttgtcgagatgctacca
catcttttgacattcgcagttccattggattttcagcaactgaagaaacaattcgctatg
ttgttgccagttctaattcaaacaatcggcatggaagatgtcatcccaagccacgtcaca
cggactattccaatgtttcttacaatctctgaacctcttcagccaaaagatctcggaaca
gtcgtcaaatatctgtgctccattacaagggacaacgactcgaatatgaccaacttggag
gatgcgttgaatggattgaacattttggcgcgacgacagccaccgaagtcattgcattct
gaagtgccacttgtggtcacgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATATGAGACCGCAAGCCCTCTAT 674 65 2110 Antisense
AATTCGAGGAGCCTGGATCCCAGAA 554 177 2180 Antisense
GATCCCAGAAGCACGTTCTTGTCGA 434 417 2195 Antisense
TGCTACCACATCTTTTGACATTCGC 402 579 2222 Antisense
TGACATTCGCAGTTCCATTGGATTT 91 571 2237 Antisense
AATTCGCTATGTTGTTGCCAGTTCT 522 177 2279 Antisense
TTCTTACAATCTCTGAACCTCTTCA 253 689 2366 Antisense
AGTCGTCAAATATCTGTGCTCCATT 544 61 2409 Antisense
GGATTGAACATTTTGGCGCGACGAC 306 509 2482 Antisense
GACAGCCACCGAAGTCATTGCATTC 3 369 2504 Antisense
GAAGTGCCACTTGTGGTCACGTCAA 102 337 2530 Antisense
Sequence Source Affymetrix Proprietary Database