[Home] | [Total List]

[181196_at]

Description T05A10.6 /REP_DB=WormBase Gene ID /WP=CE13191 /TR=P90960 /GB=CAA92138.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 32      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 340.2
(3)
P 		91.9
(-1.9)
P 		35.4
(-3)
A 		138.2
(-1)
P 		305
B 328
(3)
P 		108.3
(-2)
P 		66.6
(-3)
P 		142.1
(-1.3)
P 		261
C 374
(3)
P 		118.2
(-1.9)
P 		57.6
(-3)
P 		216.4
(0)
P 		316
avr 347.4
(3) 		106.1
(-1.9) 		53.2
(-3) 		165.6
(-0.7) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 319.3
(2.9)
P 		182.4
(-0.3)
P 		321.8
(3)
P 		199.5
(0.1)
P 		162.2
(-0.8)
P 		70.2
(-3)
P 		252
B 214.5
(1.3)
P 		183.6
(0.3)
P 		263.4
(3)
P 		147.9
(-0.9)
P 		151.5
(-0.8)
P 		86.4
(-3)
P 		177
C 189.5
(2)
P 		208.1
(3)
P 		175.4
(1.3)
P 		204.5
(2.8)
P 		123.2
(-1.4)
P 		92.9
(-3)
P 		115
avr 241.1
(2.6) 		191.4
(0.8) 		253.5
(3) 		184
(0.6) 		145.6
(-0.8) 		83.2
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 123.9
(3)
P 		20
(-2.4)
P 		9.3
(-3)
A 		20.2
(-2.4)
P 		115
B 104.6
(3)
P 		26.7
(-2.2)
P 		15.4
(-3)
P 		30.3
(-2)
P 		89
C 123.8
(3)
P 		34
(-2.2)
P 		20.1
(-3)
P 		36.5
(-2.1)
P 		104
avr 117.4
(3) 		26.9
(-2.3) 		14.9
(-3) 		29
(-2.2) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 58.9
(1.7)
P 		64.9
(2.4)
P 		70.1
(3)
P 		50.6
(0.8)
P 		48.9
(0.6)
P 		17.1
(-3)
P 		53
B 74.6
(3)
P 		61.1
(1.1)
P 		64
(1.5)
P 		39.2
(-2)
P 		61.6
(1.2)
P 		32.2
(-3)
P 		42
C 70.2
(3)
P 		63.5
(2)
P 		44.7
(-0.9)
P 		41.1
(-1.5)
P 		39.9
(-1.6)
P 		31.1
(-3)
P 		39
avr 67.9
(3) 		63.2
(2.3) 		59.6
(1.8) 		43.6
(-0.5) 		50.1
(0.4) 		26.8
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16880
Sequence Type Exemplar sequence
Representative Public ID T05A10.6 NCBI
Target Description T05A10.6 /REP_DB=WormBase Gene ID /WP=CE13191 /TR=P90960 /GB=CAA92138.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077403(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077403 NCBI Caenorhabditis elegans T05A10.6 (T05A10.6) mRNA, complete cds. 11/11 None
SNAP00000000839 ENSEMBL cdna:SNAP chromosome:CEL140:X:10792919:10793874:-1 11/11 None
GENEFINDER00000000842 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10792919:10794131:-1 11/11 None
T05A10.6 ENSEMBL cdna:known chromosome:CEL140:X:10793474:10793874:-1 gene:T05A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10793473-10793874(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A10.6
Entrez Gene 188097 Entrez gene
SwissProt P90960 EMBL-EBI
WormBase CE13191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92138 Hypothetical protein T05A10.6 [Caenorhabditis elegans] ref|NP_509804.1| T05A10.6 [Caenorhabditis elegans] 3.0E-53
blast CAA92138 Hypothetical protein T05A10.6 [Caenorhabditis elegans] ref|NP_509804.1| T05A10.6 [Caenorhabditis elegans] 1.0E-52
blast CAE70819 Hypothetical protein CBG17590 [Caenorhabditis briggsae] 5.0E-43
blast CAE70819 Hypothetical protein CBG17590 [Caenorhabditis briggsae] 2.0E-38
Sequence
Target Sequence 
>C. ELEGANS:181196_AT
atgtccgtggctactcgtaacgtatttgacaagacagttgctagtggaaagacatgggat
tgcactttggagagtaaggctcaggcagtgatcaaagagtgtttgttggataacggtggt
gtcactaatggaacattgaaactaagtttcccagtgactggtagtacaacaccagaagca
actattcaacaatttcaaacagctcttcaacttgcatccagcaattcgaatagcaagtca
caaattactgaatcgattggatgctcttatgcgcagtgtcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCGTGGCTACTCGTAACGTAT 480 47 13 Antisense
GACATGGGATTGCACTTTGGAGAGT 470 369 63 Antisense
GAGTAAGGCTCAGGCAGTGATCAAA 513 399 84 Antisense
GTTTGTTGGATAACGGTGGTGTCAC 3 451 113 Antisense
GGTGGTGTCACTAATGGAACATTGA 617 499 127 Antisense
GAAACTAAGTTTCCCAGTGACTGGT 258 357 150 Antisense
GTACAACACCAGAAGCAACTATTCA 289 461 176 Antisense
TCAAACAGCTCTTCAACTTGCATCC 608 629 207 Antisense
GCATCCAGCAATTCGAATAGCAAGT 91 309 226 Antisense
GAATCGATTGGATGCTCTTATGCGC 329 329 262 Antisense
GATGCTCTTATGCGCAGTGTCAAAG 460 413 272 Antisense
Sequence Source Affymetrix Proprietary Database