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[181195_at]

Description F56H11.2 /REP_DB=WormBase Gene ID /WP=CE16143 /TR=Q20902 /GB=CAA92959.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_high_8_8 > 61      6grp_highest_nonorm > 72      6grp_total > 04      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 551
1 2 3 4 range
A 473.4
(0.3)
P 		600.8
(2.4)
P 		636.4
(3)
P 		275.3
(-3)
A 		361
B 511.5
(0)
P 		579
(0.7)
P 		786.4
(3)
P 		235
(-3)
P 		551
C 576.7
(1)
P 		593.3
(1.2)
P 		716.7
(3)
P 		294.3
(-3)
P 		422
avr 520.5
(0.4) 		591
(1.4) 		713.2
(3) 		268.2
(-3) 		445

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 512.3
(3)
P 		408.3
(0)
P 		401.8
(-0.2)
P 		378.5
(-0.8)
P 		449.8
(1.2)
P 		302.9
(-3)
P 		209
B 378.3
(-0.4)
P 		431.3
(1.5)
P 		474
(3)
P 		376
(-0.5)
P 		388.3
(-0.1)
P 		306
(-3)
P 		168
C 369.4
(2.4)
P 		367.1
(2.1)
P 		329.2
(-3)
P 		340.6
(-1.5)
P 		365.7
(1.9)
P 		374.2
(3)
P 		45
avr 420
(3) 		402.2
(1.8) 		401.7
(1.8) 		365
(-0.6) 		401.3
(1.8) 		327.7
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 172.4
(3)
P 		130.4
(1.1)
P 		166.4
(2.7)
P 		40.3
(-3)
A 		132
B 163.1
(2.1)
P 		143
(1.2)
P 		182.2
(3)
P 		50.1
(-3)
P 		132
C 190.9
(1.2)
P 		170.6
(0.6)
P 		249.8
(3)
P 		49.6
(-3)
P 		200
avr 175.5
(2.1) 		148
(1) 		199.5
(3) 		46.7
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 94.4
(-1.3)
P 		145.2
(3)
P 		87.5
(-1.8)
P 		96
(-1.1)
P 		135.7
(2.2)
P 		73.7
(-3)
P 		72
B 131.6
(0.3)
P 		143.6
(1.5)
P 		115.1
(-1.4)
P 		99.6
(-3)
P 		157.8
(3)
P 		114.1
(-1.5)
P 		58
C 136.9
(3)
P 		112
(0.8)
P 		83.8
(-1.7)
P 		68.5
(-3)
P 		118.3
(1.4)
P 		125.3
(2)
P 		68
avr 121
(1) 		133.6
(2.5) 		95.5
(-2.1) 		88
(-3) 		137.3
(3) 		104.4
(-1) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9967
Sequence Type Exemplar sequence
Representative Public ID F56H11.2 NCBI
Target Description F56H11.2 /REP_DB=WormBase Gene ID /WP=CE16143 /TR=Q20902 /GB=CAA92959.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069291 NCBI Caenorhabditis elegans F56H11.2 (F56H11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040074 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9531481:9533130:-1 11/11 None
F56H11.2 ENSEMBL cdna:known chromosome:CEL140:IV:9531799:9533118:-1 gene:F56H11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040070 7/11 Cross Hyb Matching Probes None
SNAP00000040071 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9531804-9533124(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H11.2
Entrez Gene 186425 Entrez gene
SwissProt Q20902 EMBL-EBI
WormBase CE38375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92959 Hypothetical protein F56H11.2 [Caenorhabditis elegans] ref|NP_501692.2| F56H11.2 [Caenorhabditis elegans] 1.0E-100
blast CAE72773 Hypothetical protein CBG20027 [Caenorhabditis briggsae] 1.0E-83
blast CAE72773 Hypothetical protein CBG20027 [Caenorhabditis briggsae] 4.0E-82
blast CAA92959 Hypothetical protein F56H11.2 [Caenorhabditis elegans] ref|NP_501692.2| F56H11.2 [Caenorhabditis elegans] 3.0E-77
blast CAE72773 Hypothetical protein CBG20027 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501692.2 2 27-46,56-78
F56H11.2 2 27-46,56-78
GENEFINDER00000040074 2 31-50,60-82
Sequence
Target Sequence 
>C. ELEGANS:181195_AT
gtggtggatgctgaaagacgacgtgaaatggatgctagaactcgagagcttttagacaaa
gattcaagagaaattcagacaattcttgttatgggaggcattacatttttcatcaccatt
gtcatgttcctatcaaaaatggatatgtctgctgacaatgtcatgaattatgctccaatt
atttggcttgttggagttatgatctttggagctgttatcaattttgtaaattattacaaa
agcaagaaacgacagaaagaattggatagaatgactgtagaaagtttattggcgcatatg
gctcttccagaatctttcccatgtcttctaccaggtcctcacgatgaatgttgtggtgga
cgaggaatccctcagagaccgttaccaacctatgatgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTGGATGCTGAAAGACGACGTG 500 487 19 Antisense
GGATGCTAGAACTCGAGAGCTTTTA 426 513 48 Antisense
GGGAGGCATTACATTTTTCATCACC 11 497 111 Antisense
TCATCACCATTGTCATGTTCCTATC 111 621 128 Antisense
GTTGGAGTTATGATCTTTGGAGCTG 447 435 208 Antisense
AGTTTATTGGCGCATATGGCTCTTC 473 63 301 Antisense
ATATGGCTCTTCCAGAATCTTTCCC 557 19 314 Antisense
CTTCTACCAGGTCCTCACGATGAAT 593 219 343 Antisense
GTTGTGGTGGACGAGGAATCCCTCA 532 433 368 Antisense
CGAGGAATCCCTCAGAGACCGTTAC 641 181 379 Antisense
GAGACCGTTACCAACCTATGATGAG 43 395 393 Antisense
Sequence Source Affymetrix Proprietary Database