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[181194_s_at]

Description F41D3.10 /REP_DB=WormBase Gene ID /WP=CE25881 /TR=O45509 /GB=CAB04381.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 15.2
(-3)
A 		72.3
(-0.8)
A 		15.2
(-3)
A 		172.8
(3)
A 		158
B 83.1
(3)
A 		5.9
(-3)
A 		12.9
(-2.5)
A 		53.1
(0.7)
A 		77
C 18.8
(-2.6)
A 		18.4
(-2.7)
A 		4.3
(-3)
A 		246.9
(3)
P 		243
avr 39
(-1.8) 		32.2
(-2.1) 		10.8
(-3) 		157.6
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 10.5
(-2.3)
A 		3.9
(-3)
A 		9.3
(-2.4)
A 		19.9
(-1.2)
A 		58.5
(3)
A 		18.6
(-1.4)
A 		55
B 7.4
(-0.8)
A 		14.9
(3)
A 		9.7
(0.4)
A 		11.6
(1.3)
A 		3.1
(-3)
A 		5.8
(-1.6)
A 		12
C 7.5
(-2.7)
A 		51.3
(3)
A 		10.1
(-2.3)
A 		6.6
(-2.8)
A 		45
(2.2)
A 		4.9
(-3)
A 		46
avr 8.5
(-3) 		23.4
(0.3) 		9.7
(-2.7) 		12.7
(-2.1) 		35.5
(3) 		9.8
(-2.7) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 5.5
(-2.6)
A 		15.7
(0.3)
A 		4
(-3)
A 		25.3
(3)
A 		21
B 26.5
(3)
A 		1.5
(-3)
A 		3
(-2.6)
A 		11.3
(-0.6)
A 		25
C 6.2
(-2.3)
A 		5.3
(-2.4)
A 		1.5
(-3)
A 		41.6
(3)
P 		40
avr 12.7
(-0.5) 		7.5
(-1.8) 		2.8
(-3) 		26.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.9
(-2.8)
A 		1.4
(-3)
A 		2
(-2.8)
A 		5
(-1.7)
A 		17.7
(3)
A 		4.5
(-1.9)
A 		16
B 2.6
(-0.8)
A 		5
(3)
A 		2.4
(-1.1)
A 		3.1
(0)
A 		1.2
(-3)
A 		2.2
(-1.4)
A 		4
C 2.8
(-2.4)
A 		15.7
(3)
A 		2.6
(-2.5)
A 		1.3
(-3)
A 		14.6
(2.5)
A 		1.6
(-2.9)
A 		14
avr 2.4
(-2.9) 		7.4
(0.4) 		2.3
(-3) 		3.1
(-2.5) 		11.2
(3) 		2.8
(-2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181194_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.607
Sequence Type Exemplar sequence
Representative Public ID F41D3.10 NCBI
Target Description F41D3.10 /REP_DB=WormBase Gene ID /WP=CE25881 /TR=O45509 /GB=CAB04381.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060693(11), NM_060697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060693 NCBI Caenorhabditis elegans F41D3.5 (F41D3.5) mRNA, complete cds. 11/11 None
NM_060697 NCBI Caenorhabditis elegans F41D3.10 (F41D3.10) mRNA, complete cds. 11/11 None
SNAP00000037771 ENSEMBL cdna:SNAP chromosome:CEL140:I:12268034:12270970:-1 11/11 None
SNAP00000037774 ENSEMBL cdna:SNAP chromosome:CEL140:I:12277377:12280312:-1 11/11 None
F41D3.5 ENSEMBL cdna:known chromosome:CEL140:I:12268034:12270970:-1 gene:F41D3.5 11/11 None
F41D3.10 ENSEMBL cdna:known chromosome:CEL140:I:12277377:12280312:-1 gene:F41D3.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037790 7/11 Cross Hyb Matching Probes None
GENEFINDER00000037788 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12277307-12280243(-) 100.0 100.0
chrI:12267964-12270901(-) 99.95 99.95
Public Domain and Genome References
Gene Title

Ensembl F41D3.5
F41D3.10
Entrez Gene 185605 Entrez gene
185610 Entrez gene
WormBase CE25881 Wormbase
CE25881 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04376 Hypothetical protein F41D3.10 [Caenorhabditis elegans] emb|CAB04381.2| Hypothetical protein F41D3.5 [Caenorhabditis elegans] ref|NP_493098.1| F41D3.10 [Caenorhabditis elegans] ref|NP_493094.1| F41D3.5 [Caenorhabditis elegans] 0.0
blast CAB04108 Hypothetical protein F14B6.5 [Caenorhabditis elegans] ref|NP_493089.2| F14B6.5 [Caenorhabditis elegans] 0.0
blast AAB66028 Hypothetical protein C17A2.5 [Caenorhabditis elegans] ref|NP_494665.1| C17A2.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493094.1 11 12-31,36-58,78-97,139-161,168-187,197-215,245-267,271-293,300-319,329-348,353-375
NP_493098.1 11 12-31,36-58,78-97,139-161,168-187,197-215,245-267,271-293,300-319,329-348,353-375
F41D3.5 11 12-31,36-58,78-97,139-161,168-187,197-215,245-267,271-293,300-319,329-348,353-375
F41D3.10 11 12-31,36-58,78-97,139-161,168-187,197-215,245-267,271-293,300-319,329-348,353-375
SNAP00000037771 9 12-31,36-58,78-97,139-161,168-185,225-247,268-290,300-319,324-346
SNAP00000037774 9 12-31,36-58,78-97,139-161,168-185,225-247,268-290,300-319,324-346
Sequence
Target Sequence 
>C. ELEGANS:181194_S_AT
gttgtgaagttttgtacccgagccttgtgaagggaatggtctgtcaggattatgttgatg
attttcaaaaaaggatgaaagctgaaaatcctgattatctatttatcattacaagataca
taagtgtcggtgagccattccctgctaacattacaagtttcgatttggacccaatctacc
aaactatgaaaaatctactttttggactattggctagtacaaagttaaaaatttacattc
tcgacgcaatacccagacataacgtcaataatacaaagtttattgcggagtgggtgaagg
agggtgtgaatctggtggaaatagataaacgacttggtctaatggaggatcaactgaccg
acggagcctcctacgaaatggcgcgtcgcaggtacgcggcgctcgtaaaagattgtgatg
ggcggtgtgttcttgtggattataagccagtgttctacaattcaactatcaaatcctacc
ggatatttgacaatagtgggtactcctacctcacgacgccgaaacatttgacaccccgtg
gtttggagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTGAAGTTTTGTACCCGAGCCT 255 435 1445 Antisense
CATAAGTGTCGGTGAGCCATTCCCT 277 211 1563 Antisense
AGCCATTCCCTGCTAACATTACAAG 687 83 1577 Antisense
CATTCTCGACGCAATACCCAGACAT 210 217 1680 Antisense
GAGGATCAACTGACCGACGGAGCCT 350 403 1789 Antisense
CGACGGAGCCTCCTACGAAATGGCG 311 251 1803 Antisense
AAATGGCGCGTCGCAGGTACGCGGC 390 119 1820 Antisense
GATTGTGATGGGCGGTGTGTTCTTG 57 435 1855 Antisense
ACAATAGTGGGTACTCCTACCTCAC 553 113 1934 Antisense
ACCTCACGACGCCGAAACATTTGAC 138 71 1952 Antisense
ATTTGACACCCCGTGGTTTGGAGCA 379 15 1970 Antisense
Sequence Source Affymetrix Proprietary Database