[Home] | [Total List]

[181192_at]

Description F36A2.11 /REP_DB=WormBase Gene ID /WP=CE09950 /TR=Q9XVN7 /GB=CAB03068.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 0.6
(-3)
A 		4.8
(-0.2)
A 		6.1
(0.7)
A 		9.5
(3)
A 		9
B 12.4
(3)
A 		3.8
(-3)
A 		5.9
(-1.5)
A 		4.2
(-2.7)
A 		9
C 32.7
(-0.9)
A 		6.2
(-2.9)
A 		5.5
(-3)
A 		83.8
(3)
A 		78
avr 15.2
(-0.8) 		4.9
(-3) 		5.8
(-2.8) 		32.5
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 3.8
(-3)
A 		3.6
(-3)
A 		18.6
(-2)
A 		5.4
(-2.9)
A 		51.7
(0.2)
A 		92.5
(3)
P 		89
B 9.6
(-2.7)
A 		3.3
(-3)
A 		3.7
(-3)
A 		4.8
(-2.9)
A 		56.6
(-0.7)
A 		142.6
(3)
P 		139
C 1.7
(-3)
A 		23.5
(-1.3)
A 		4
(-2.8)
A 		32.6
(-0.6)
A 		33.4
(-0.6)
A 		80
(3)
P 		78
avr 5
(-3) 		10.1
(-2.7) 		8.8
(-2.8) 		14.3
(-2.4) 		47.2
(-0.5) 		105
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.2
(-3)
A 		1
(0.4)
A 		1.6
(3)
A 		1.4
(2.1)
A 		1
B 4
(3)
A 		0.9
(-3)
A 		1.4
(-2)
A 		0.9
(-3)
A 		3
C 10.8
(1.4)
A 		1.8
(-3)
A 		1.9
(-3)
A 		14.1
(3)
A 		12
avr 5
(2.3) 		1.2
(-3) 		1.6
(-2.4) 		5.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.3
(-2.8)
A 		4.1
(-2.1)
A 		1.4
(-2.8)
A 		15.6
(1.1)
A 		22.5
(3)
P 		22
B 3.3
(-2.7)
A 		1.1
(-3)
A 		0.9
(-3)
A 		1.3
(-3)
A 		23
(-0.5)
A 		53.2
(3)
P 		52
C 0.6
(-3)
A 		7.2
(-1.5)
A 		1
(-2.9)
A 		6.6
(-1.6)
A 		10.8
(-0.7)
A 		26.8
(3)
P 		26
avr 1.5
(-3) 		3.2
(-2.7) 		2
(-2.9) 		3.1
(-2.7) 		16.5
(-0.2) 		34.2
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.613
Sequence Type Exemplar sequence
Representative Public ID F36A2.11 NCBI
Target Description F36A2.11 /REP_DB=WormBase Gene ID /WP=CE09950 /TR=Q9XVN7 /GB=CAB03068.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059986 NCBI Caenorhabditis elegans F36A2.11 (F36A2.11) mRNA, complete cds. 11/11 None
SNAP00000004927 ENSEMBL cdna:SNAP chromosome:CEL140:I:8830413:8831731:1 11/11 None
GENEFINDER00000004941 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8830413:8831731:1 11/11 None
F36A2.11 ENSEMBL cdna:known chromosome:CEL140:I:8830413:8831731:1 gene:F36A2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8830343-8831662(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36A2.11
Entrez Gene 185337 Entrez gene
SwissProt Q9XVN7 EMBL-EBI
WormBase CE34181 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03068 Hypothetical protein F36A2.11 [Caenorhabditis elegans] ref|NP_492387.2| F36A2.11 [Caenorhabditis elegans] 1.0E-122
blast CAB03068 Hypothetical protein F36A2.11 [Caenorhabditis elegans] ref|NP_492387.2| F36A2.11 [Caenorhabditis elegans] 1.0E-107
blast CAE67080 Hypothetical protein CBG12489 [Caenorhabditis briggsae] 7.0E-92
blast CAE67080 Hypothetical protein CBG12489 [Caenorhabditis briggsae] 8.0E-81
Sequence
Target Sequence 
>C. ELEGANS:181192_AT
gtgtgctggatacttggaaaacgtcttcattccatattcttcgaagagttttgtgccaca
agcctacacagcaatctttgaaaacttttcgacaaagatgaaggcagctggcgtttcgag
aaaatgtcatcaagcgttgcaagcccacgatcttcgacatatgaaaaagtttcataccga
aagttatgaagcttttgttgagcagagaaagaagtttgacgaatcccgaaagaaaatgga
ccaggcaaaggcggacgttcgtgatgcaaaaacgacgacggcgattgagaagaaagcaat
ttgttatcaattgactgtcgacgactttgatcagaaaacggaagagctgatcaagatcat
agaggctctgccaaaagtgaaacaagaatatgttcgtgacatctacttgattctctcgaa
gcacaaacaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGCTGGATACTTGGAAAACGTC 239 487 210 Antisense
AAAACGTCTTCATTCCATATTCTTC 134 131 227 Antisense
TTTGTGCCACAAGCCTACACAGCAA 87 667 259 Antisense
GATGAAGGCAGCTGGCGTTTCGAGA 553 409 306 Antisense
TGTCATCAAGCGTTGCAAGCCCACG 391 557 334 Antisense
CAAGCCCACGATCTTCGACATATGA 159 187 349 Antisense
GGACCAGGCAAAGGCGGACGTTCGT 65 523 447 Antisense
GACTGTCGACGACTTTGATCAGAAA 605 375 522 Antisense
GATCAAGATCATAGAGGCTCTGCCA 391 421 558 Antisense
TCGTGACATCTACTTGATTCTCTCG 246 605 603 Antisense
GATTCTCTCGAAGCACAAACAATTT 208 431 618 Antisense
Sequence Source Affymetrix Proprietary Database