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[181190_at]

Description F54G2.1 /REP_DB=WormBase Gene ID /WP=CE19460 /TR=O76570 /GB=AAC64625.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      4grp_high_8_8 > 09      6grp_total > 16      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 345.9
(2.5)
P 		124.8
(-1.5)
M 		46.1
(-3)
A 		371
(3)
P 		325
B 331.3
(3)
P 		109.4
(-1.6)
A 		42.7
(-3)
A 		174.7
(-0.3)
P 		289
C 312.1
(3)
P 		145.2
(-2.9)
P 		142.8
(-3)
P 		259.5
(1.1)
P 		169
avr 329.8
(3) 		126.5
(-1.8) 		77.2
(-3) 		268.4
(1.5) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 251.4
(3)
P 		205.5
(0.9)
P 		137.9
(-2.3)
P 		122.8
(-3)
M 		141.6
(-2.1)
A 		151.8
(-1.6)
P 		129
B 223.3
(3)
P 		202.1
(2.2)
P 		146
(0.1)
M 		90.2
(-2.1)
P 		116.5
(-1.1)
P 		65.4
(-3)
P 		158
C 256.2
(3)
P 		186.1
(1.1)
P 		127.1
(-0.5)
M 		35.7
(-3)
A 		111.1
(-0.9)
M 		92.4
(-1.5)
P 		221
avr 243.6
(3) 		197.9
(1.3) 		137
(-1) 		82.9
(-3) 		123.1
(-1.5) 		103.2
(-2.2) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 125.9
(3)
P 		27.1
(-2.2)
M 		12
(-3)
A 		54.3
(-0.8)
P 		114
B 105.6
(3)
P 		27
(-1.9)
A 		9.9
(-3)
A 		37.2
(-1.3)
P 		96
C 103.3
(3)
P 		41.8
(-3)
P 		49.8
(-2.2)
P 		43.7
(-2.8)
P 		62
avr 111.6
(3) 		32
(-2.4) 		23.9
(-3) 		45.1
(-1.5) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 46.3
(-0.7)
P 		73.1
(3)
P 		30
(-3)
P 		31.1
(-2.8)
M 		42.7
(-1.2)
A 		37
(-2)
P 		43
B 77.7
(3)
P 		67.3
(1.8)
P 		35.5
(-1.7)
M 		23.9
(-3)
P 		47.4
(-0.4)
P 		24.4
(-2.9)
P 		54
C 95
(3)
P 		56.8
(0.4)
P 		32.4
(-1.3)
M 		7.2
(-3)
A 		36
(-1)
M 		30.9
(-1.4)
P 		88
avr 73
(3) 		65.7
(2.2) 		32.6
(-1.6) 		20.7
(-3) 		42
(-0.6) 		30.8
(-1.8) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18124
Sequence Type Exemplar sequence
Representative Public ID F54G2.1 NCBI
Target Description F54G2.1 /REP_DB=WormBase Gene ID /WP=CE19460 /TR=O76570 /GB=AAC64625.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029541, NM_001029540
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000037521 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2621738:2630698:-1 11/11 None
F54G2.1b ENSEMBL cdna:known chromosome:CEL140:X:2621288:2630698:-1 gene:F54G2.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029540 7/11 Cross Hyb Matching Probes None
NM_001029541 3/11 Cross Hyb Matching Probes None
SNAP00000037517 7/11 Cross Hyb Matching Probes None
F54G2.1a 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2621737-2630698(-) 100.0 100.0
Public Domain and Genome References
Ensembl F54G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP40529 Hypothetical protein F54G2.1b [Caenorhabditis elegans] ref|NP_001024712.1| F54G2.1b [Caenorhabditis elegans] 0.0
blast T33337 hypothetical protein F54G2.1 - Caenorhabditis elegans 0.0
blast NP_001024711 F54G2.1a [Caenorhabditis elegans] 0.0
blast CAE58850 Hypothetical protein CBG02073 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.7E-56
Pfam IPR000008 EMBL-EBI C2 domain 3.9E-6
Pfam IPR000008 EMBL-EBI C2 domain 6.3E-8
Pfam IPR000008 EMBL-EBI C2 domain 6.4E-29
Sequence
Target Sequence 
>C. ELEGANS:181190_AT
catagtatcacctgtctctgcggtgcttctaattcagttgtttttttttggaactgtttt
atttttatttttttgataagagctcttcttgctagtcgcgtttcatcccccaacgaagtg
agcgagtgtaaatatggaattctcaacgtcagagcatattataatggaaatgcacagaca
ctagttcttgatattatcggagcaaaacaaattattgcactagattccaacggactttcc
gacccatttgtcgttattgaaatcattccgaagttccggtacccggcagttcctgtcgtg
aagactaaagttgtttcaaaatctcttaatccgatattcgacgaaacttttgaatttcac
attccgccaaatccaccatcgactgctatgcttcactttactgtcatggatcatgactat
cttaggtcgaacgactttgcaggagaagcttttcttgaattgaatgatgttcccggattc
ggtgccactggtggaagtactctacgtcagttcaaccttatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATAGTATCACCTGTCTCTGCGGTG 430 211 2983 Antisense
GCGGTGCTTCTAATTCAGTTGTTTT 73 293 3002 Antisense
GATAAGAGCTCTTCTTGCTAGTCGC 401 421 3057 Antisense
TTCATCCCCCAACGAAGTGAGCGAG 186 689 3084 Antisense
GACTTTCCGACCCATTTGTCGTTAT 457 371 3215 Antisense
CCGGCAGTTCCTGTCGTGAAGACTA 382 265 3265 Antisense
TGAATTTCACATTCCGCCAAATCCA 592 575 3333 Antisense
TCGACTGCTATGCTTCACTTTACTG 531 601 3361 Antisense
AATGATGTTCCCGGATTCGGTGCCA 629 163 3445 Antisense
GCCACTGGTGGAAGTACTCTACGTC 294 279 3466 Antisense
CTCTACGTCAGTTCAACCTTATCCT 329 229 3482 Antisense
Sequence Source Affymetrix Proprietary Database