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[181189_s_at]

Description C26E6.8 /REP_DB=WormBase Gene ID /WP=CE01166 /TR=Q18217 /GB=AAA21162.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 63      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 689.9
(3)
P 		613.7
(-1.3)
P 		663.7
(1.5)
P 		584.6
(-3)
P 		105
B 699.1
(3)
P 		500.6
(-3)
P 		659
(1.8)
P 		581.7
(-0.5)
P 		199
C 633.8
(-0.8)
P 		557.8
(-3)
P 		763
(3)
P 		648.4
(-0.4)
P 		205
avr 674.3
(2.1) 		557.4
(-3) 		695.2
(3) 		604.9
(-0.9) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 579.6
(-3)
P 		703.4
(-1)
P 		954.5
(3)
P 		826.5
(1)
P 		819.5
(0.8)
P 		772.7
(0.1)
P 		375
B 618.1
(-3)
P 		712.5
(-1.6)
P 		885.2
(0.9)
P 		802.2
(-0.3)
P 		965.8
(2.1)
P 		1028.2
(3)
P 		410
C 518.7
(-3)
P 		748.1
(0.5)
P 		762.7
(0.8)
P 		816.7
(1.6)
P 		785.8
(1.1)
P 		907
(3)
P 		388
avr 572.1
(-3) 		721.3
(-0.3) 		867.5
(2.4) 		815.1
(1.4) 		857
(2.2) 		902.6
(3) 		331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 251.2
(3)
P 		133.2
(-1.3)
P 		173.5
(0.2)
P 		85.6
(-3)
P 		166
B 222.9
(3)
P 		123.6
(-3)
P 		152.7
(-1.2)
P 		124
(-3)
P 		99
C 209.8
(0.9)
P 		160.4
(-1)
P 		265.9
(3)
P 		109.3
(-3)
P 		157
avr 228
(3) 		139.1
(-1.4) 		197.4
(1.5) 		106.3
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 106.8
(-3)
P 		250.2
(3)
P 		207.9
(1.2)
P 		209.6
(1.3)
P 		247.3
(2.9)
P 		188.1
(0.4)
P 		143
B 215.1
(-2.9)
P 		237.2
(-2.2)
P 		214.9
(-2.9)
P 		212.5
(-3)
P 		392.4
(3)
P 		383.4
(2.7)
P 		180
C 192.3
(-1.8)
P 		228.3
(-0.2)
P 		194.1
(-1.7)
P 		164.2
(-3)
P 		254.3
(0.9)
P 		303.6
(3)
P 		139
avr 171.4
(-3) 		238.6
(0.2) 		205.6
(-1.4) 		195.4
(-1.9) 		298
(3) 		291.7
(2.7) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181189_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7400
Sequence Type Exemplar sequence
Representative Public ID C26E6.8 NCBI
Target Description C26E6.8 /REP_DB=WormBase Gene ID /WP=CE01166 /TR=Q18217 /GB=AAA21162.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065636 NCBI Caenorhabditis elegans yeast ULA (ubiquitin activating) homolog family member (ula-1) (ula-1) mRNA, complete cds. 11/11 None
GENEFINDER00000014714 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4918092:4930092:-1 9/11 None
SNAP00000014695 ENSEMBL cdna:SNAP chromosome:CEL140:III:4918360:4920277:-1 11/11 None
C26E6.8.1 ENSEMBL cdna:known chromosome:CEL140:III:4918238:4920280:-1 gene:C26E6.8 11/11 None
C26E6.8.2 ENSEMBL cdna:known chromosome:CEL140:III:4918238:4920282:-1 gene:C26E6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4918359-4920277(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ula-1
Ensembl C26E6.8
Entrez Gene 266650 Entrez gene
SwissProt Q18217 EMBL-EBI
WormBase CE29678 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA21162 Yeast ula (ubiquitin activating) homolog protein 1 [Caenorhabditis elegans] ref|NP_498037.2| yeast ULA (ubiquitin activating) homolog family member (ula-1) [Caenorhabditis elegans] 0.0
blast CAE71301 Hypothetical protein CBG18190 [Caenorhabditis briggsae] 0.0
blast AAK67214 Set (trithorax/polycomb) domain containing protein 2, isoform a [Caenorhabditis elegans] ref|NP_498040.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] sp|Q18221|SET2_CAEEL Protein set-2 0.0
blast AAK67215 Set (trithorax/polycomb) domain containing protein 2, isoform c [Caenorhabditis elegans] ref|NP_498039.1| SET (trithorax/polycomb) domain containing family member (set-2) [Caenorhabditis elegans] 0.0
blast H88444 protein C26E6.12 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 3.1E-37
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.4E-8
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-54
Pfam IPR002779 EMBL-EBI Protein of unknown function DUF80 3.8E-80
Pfam IPR000594 EMBL-EBI UBA/THIF-type NAD/FAD binding fold 3.1E-37
Sequence
Target Sequence 
>C. ELEGANS:181189_S_AT
ggaagtgcttcgtttgacacgtgaagtagagaaggaacgaggtgttggtgacgtcatatc
ggatgacgtttgctatcgtttctgtaagaacgctgatcggattcgagttcagtatggcga
tgtgcttgactacaacgaagaaaccaaagcaattgttgagaaaattcgtgaaagcaatat
tgatgaagagactagaaatcagaaagttgatgaagccacgtggatgctactgatgagggc
agttggaaggttccaaaaagaaaaaggacgttacccaggaactaatggagttccagtttc
aattgatgctcaagatttgaagaagagagttgaagttttgattcgagaagctttgaagga
tgaacaggacttcacatcaatctcaaataaagtgacagacactgctatcgctgaaatttg
tcgttttggtgctgcggagttacatgtcatttcatcgtacgtcggtggaatagctgctca
agagattatcaaattggctaccaatcaatatgttcccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTGCTTCGTTTGACACGTGAA 695 531 1014 Antisense
GGATGACGTTTGCTATCGTTTCTGT 483 511 1074 Antisense
GATCGGATTCGAGTTCAGTATGGCG 93 419 1108 Antisense
CAGTATGGCGATGTGCTTGACTACA 707 205 1123 Antisense
GCCACGTGGATGCTACTGATGAGGG 654 279 1228 Antisense
GAACAGGACTTCACATCAATCTCAA 462 351 1375 Antisense
AGTGACAGACACTGCTATCGCTGAA 107 61 1404 Antisense
AATTTGTCGTTTTGGTGCTGCGGAG 327 173 1428 Antisense
GTGCTGCGGAGTTACATGTCATTTC 35 479 1442 Antisense
GTACGTCGGTGGAATAGCTGCTCAA 66 457 1470 Antisense
GGCTACCAATCAATATGTTCCCATT 67 539 1509 Antisense
Sequence Source Affymetrix Proprietary Database