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[181186_s_at]

Description C47A10.2 /REP_DB=WormBase Gene ID /WP=CE15715 /TR=O45304 /GB=CAB03967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 43      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 4
(-2.7)
A 		33.9
(3)
A 		2.5
(-3)
A 		5.6
(-2.4)
A 		31
B 4.9
(-2.3)
A 		14.4
(3)
A 		4.7
(-2.4)
A 		3.7
(-3)
A 		11
C 2.6
(-2.7)
A 		30.7
(3)
A 		1.2
(-3)
A 		3.1
(-2.6)
A 		30
avr 3.8
(-2.7) 		26.3
(3) 		2.8
(-3) 		4.1
(-2.7) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.7
(-2.2)
A 		1.3
(-3)
A 		2
(-2.8)
A 		7.2
(-1.7)
A 		16.6
(0.4)
A 		28.3
(3)
A 		27
B 2.2
(-2.5)
A 		1.1
(-3)
A 		1.2
(-3)
A 		14.6
(3)
A 		1.1
(-3)
A 		3.4
(-2)
A 		14
C 4.1
(-1.1)
A 		1.1
(-3)
A 		3
(-1.8)
A 		10.5
(3)
A 		2.7
(-2)
A 		1.6
(-2.7)
A 		9
avr 3.7
(-1.5) 		1.2
(-3) 		2.1
(-2.5) 		10.8
(2.8) 		6.8
(0.4) 		11.1
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.4
(-2.3)
A 		7.3
(3)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		7
B 1.6
(-1.3)
A 		3.6
(3)
A 		1.1
(-2.4)
A 		0.8
(-3)
A 		3
C 0.9
(-2.6)
A 		8.8
(3)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		8
avr 1.3
(-2.4) 		6.6
(3) 		0.7
(-3) 		0.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.5)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.8
(-1.7)
A 		5
(1.2)
A 		6.9
(3)
A 		7
B 0.8
(-2.2)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3.9
(3)
A 		0.4
(-2.8)
A 		1.3
(-1.3)
A 		4
C 1.5
(0.9)
A 		0.4
(-3)
A 		0.8
(-1.6)
A 		2.1
(3)
A 		0.9
(-1.2)
A 		0.5
(-2.6)
A 		2
avr 1.1
(-1.3) 		0.4
(-3) 		0.5
(-2.8) 		2.6
(2.3) 		2.1
(1.1) 		2.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181186_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14609
Sequence Type Exemplar sequence
Representative Public ID C47A10.2 NCBI
Target Description C47A10.2 /REP_DB=WormBase Gene ID /WP=CE15715 /TR=O45304 /GB=CAB03967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075087(11), NM_075088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075087 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-283) (srh-283) mRNA, complete cds. 11/11 A 
NM_075088 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-284) (srh-284) mRNA, complete cds. 11/11 A 
GENEFINDER00000022120 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17767656:17772148:1 11/11 None
C47A10.2 ENSEMBL cdna:known chromosome:CEL140:V:17767924:17769356:1 gene:C47A10.2 11/11 A 
C47A10.3 ENSEMBL cdna:known chromosome:CEL140:V:17770125:17772197:1 gene:C47A10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022109 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17767923-17769356(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol srh-283
srh-284
Ensembl C47A10.2
C47A10.3
Entrez Gene 183527 Entrez gene
183528 Entrez gene
SwissProt O45304 EMBL-EBI
O45305 EMBL-EBI
WormBase CE15715 Wormbase
CE35962 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-169
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-164
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-154
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-151
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-127
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-120
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-89
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507488.1 7 15-36,49-71,91-113,134-153,190-212,239-261,271-293
NP_507489.2 7 15-36,49-71,91-113,134-153,196-218,239-261,271-293
C47A10.2 7 15-36,49-71,91-113,134-153,190-212,239-261,271-293
C47A10.3 7 15-36,49-71,91-113,134-153,196-218,239-261,271-293
GENEFINDER00000022120 11 20-42,55-77,97-119,140-159,196-218,250-272,287-309,330-349,386-408,461-483,493-515
Sequence
Target Sequence 
>C. ELEGANS:181186_S_AT
gaatcgccacagtatcaatattcgaaaaccggtactacctaatttttgcaaaacatacgt
ggtggcgtttcggcagatatccatttttcctgctcaactatatatatgccctgacctact
acatcccaactatccgggcaattccgaatcaggaaatcggacggaaagagatattcaaat
tatatccccatttcttggagcttgactcgccggagcatccggcttttgtggtaactctcg
gtgatccattaattgtatatcggcagctcatggtaacggcgctcgttgttatcgaaatgc
tggtttttgctggaattctcaacgcaagtatgagtgtcgaaatgcggaagaccagtgggt
ccgacagaactatgaagttgcagaaggattttttacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGCCACAGTATCAATATTCGA 651 329 329 Antisense
AAATTATATCCCCATTTCTTGGAGC 151 115 505 Antisense
TCCCCATTTCTTGGAGCTTGACTCG 318 597 513 Antisense
GGAGCATCCGGCTTTTGTGGTAACT 603 519 540 Antisense
GCTTTTGTGGTAACTCTCGGTGATC 622 303 550 Antisense
GGTAACTCTCGGTGATCCATTAATT 181 487 558 Antisense
CTCTCGGTGATCCATTAATTGTATA 248 229 563 Antisense
CTCATGGTAACGGCGCTCGTTGTTA 674 227 595 Antisense
ACGGCGCTCGTTGTTATCGAAATGC 27 95 604 Antisense
TTATCGAAATGCTGGTTTTTGCTGG 246 669 617 Antisense
GAAGTTGCAGAAGGATTTTTTACGG 57 337 702 Antisense
Sequence Source Affymetrix Proprietary Database