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[181185_at]

Description C47A10.2 /REP_DB=WormBase Gene ID /WP=CE15715 /TR=O45304 /GB=CAB03967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 10      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 23.4
(-0.8)
A 		3.3
(-3)
A 		21.7
(-1)
A 		57.7
(3)
A 		54
B 11.3
(-2.5)
A 		37.8
(3)
A 		8.9
(-3)
A 		23.7
(0.1)
A 		29
C 28.6
(-3)
M 		34.5
(-2.5)
M 		29.4
(-2.9)
A 		96.6
(3)
A 		68
avr 21.1
(-2.8) 		25.2
(-2.2) 		20
(-3) 		59.3
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 28.3
(-0.4)
A 		24.8
(-1.7)
A 		21.3
(-3)
A 		31.5
(0.8)
A 		37.4
(3)
A 		34.3
(1.8)
A 		16
B 2.6
(-3)
A 		19.4
(0.1)
A 		10.6
(-1.5)
A 		15.6
(-0.6)
A 		35.4
(3)
A 		32.4
(2.5)
M 		33
C 3.6
(-3)
A 		40.9
(3)
A 		31.5
(1.5)
A 		23.4
(0.2)
A 		25
(0.4)
A 		10.3
(-1.9)
A 		37
avr 11.5
(-3) 		28.4
(1.8) 		21.1
(-0.3) 		23.5
(0.4) 		32.6
(3) 		25.7
(1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.5
(3)
A 		0.7
(-3)
A 		5.7
(0.8)
A 		8.4
(2.9)
A 		8
B 3.6
(-1.8)
A 		9.3
(3)
A 		2.1
(-3)
A 		5.1
(-0.5)
A 		7
C 9.5
(-3)
M 		9.9
(-2.6)
M 		10.3
(-2.3)
A 		16.3
(3)
A 		7
avr 7.2
(-1.2) 		6.6
(-2.1) 		6
(-3) 		9.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.2
(-2.5)
A 		8.8
(0.8)
A 		4.6
(-3)
A 		8
(0)
A 		11.3
(3)
A 		8.3
(0.3)
A 		7
B 0.9
(-3)
A 		6.5
(-0.5)
A 		2.6
(-2.2)
A 		4.1
(-1.6)
A 		14.4
(3)
A 		12.1
(2)
M 		14
C 1.3
(-3)
A 		12.5
(3)
A 		8
(0.6)
A 		4.7
(-1.2)
A 		8.1
(0.6)
A 		3.4
(-1.9)
A 		11
avr 2.5
(-3) 		9.3
(1.6) 		5.1
(-1.2) 		5.6
(-0.9) 		11.3
(3) 		7.9
(0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14609
Sequence Type Exemplar sequence
Representative Public ID C47A10.2 NCBI
Target Description C47A10.2 /REP_DB=WormBase Gene ID /WP=CE15715 /TR=O45304 /GB=CAB03967.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075087(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075087 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-283) (srh-283) mRNA, complete cds. 11/11 A 
C47A10.2 ENSEMBL cdna:known chromosome:CEL140:V:17767924:17769356:1 gene:C47A10.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022120 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17767923-17769356(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-283
Ensembl C47A10.2
Entrez Gene 183527 Entrez gene
SwissProt O45304 EMBL-EBI
WormBase CE15715 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-169
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-154
blast CAB07355 Hypothetical protein F11A5.2 [Caenorhabditis elegans] ref|NP_507082.2| Serpentine Receptor, class H family member (srh-279) [Caenorhabditis elegans] 5.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507488.1 7 15-36,49-71,91-113,134-153,190-212,239-261,271-293
C47A10.2 7 15-36,49-71,91-113,134-153,190-212,239-261,271-293
Sequence
Target Sequence 
>C. ELEGANS:181185_AT
tacgtggtggcgtttcggcagatatccatttttcctgctcaactatatatatgccctgac
ctactacatcccaactatccgggcaattccgaatcaggaaatcggacggaaagagatatt
caaattatatccccatttcttggagcttgactcgccggagcatccggcttttgtggtaac
tctcggtgatccattaattgtatatcggcagctcatggtaacggcgctcgttgttatcga
aatgctggtttttgctggaattctcaacgcaagtatgagtgtcgaaatgcggaagaccag
tgggtccgacagaactatgaagttgcagaaggattttttacgggcgttgaagttacaggt
tctcattccaatagtaataatcatcatcccatcaattataatcagtatattggatctgaa
caacattcacattcaaggtgccagctgtctaatgtgcattattttctcagctcacggagc
aacttcctcactattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGTGGTGGCGTTTCGGCAGATAT 370 647 384 Antisense
CAGATATCCATTTTTCCTGCTCAAC 196 207 402 Antisense
CCTGCTCAACTATATATATGCCCTG 573 265 417 Antisense
CATCCCAACTATCCGGGCAATTCCG 236 211 450 Antisense
GGTTTTTGCTGGAATTCTCAACGCA 668 505 630 Antisense
GACCAGTGGGTCCGACAGAACTATG 258 383 678 Antisense
GGGCGTTGAAGTTACAGGTTCTCAT 248 491 725 Antisense
TAGTAATAATCATCATCCCATCAAT 57 655 755 Antisense
TCACATTCAAGGTGCCAGCTGTCTA 243 627 810 Antisense
CTAATGTGCATTATTTTCTCAGCTC 636 227 832 Antisense
CACGGAGCAACTTCCTCACTATTGA 531 199 856 Antisense
Sequence Source Affymetrix Proprietary Database