[Home] | [Total List]

[181184_at] 7TM chemoreceptor, str family

Description Y9C9A.6 /REP_DB=WormBase Gene ID /WP=CE25656 /TR=Q9N2T0 /GB=AAF60931.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 05      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 44.2
(-2.8)
A 		46.5
(-2.6)
A 		42.2
(-3)
A 		110.5
(3)
A 		68
B 53.9
(-2.8)
A 		61.6
(-1.2)
A 		53
(-3)
A 		82
(3)
A 		29
C 117
(1.1)
A 		13.4
(-3)
A 		55.5
(-1.3)
A 		164.1
(3)
A 		151
avr 71.7
(-0.6) 		40.5
(-3) 		50.2
(-2.3) 		118.9
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 14.9
(-1.7)
A 		3.3
(-3)
A 		43.5
(1.4)
A 		4.2
(-2.9)
A 		58.6
(3)
A 		6.9
(-2.6)
A 		55
B 11.4
(-3)
A 		41.5
(1.2)
A 		49.4
(2.4)
A 		54
(3)
A 		27.2
(-0.8)
A 		19.4
(-1.9)
A 		43
C 4.9
(-3)
A 		97.1
(3)
A 		7.1
(-2.9)
A 		8.2
(-2.8)
A 		20
(-2)
A 		52.4
(0.1)
A 		92
avr 10.4
(-3) 		47.3
(3) 		33.3
(0.7) 		22.1
(-1.1) 		35.3
(1) 		26.2
(-0.4) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 16.1
(2.9)
A 		10.1
(-3)
A 		11
(-2.1)
A 		16.2
(3)
A 		6
B 17.2
(2.7)
A 		15.2
(0.3)
A 		12.3
(-3)
A 		17.5
(3)
A 		5
C 38.7
(3)
A 		3.8
(-3)
A 		19.3
(-0.3)
A 		27.7
(1.1)
A 		35
avr 24
(3) 		9.7
(-3) 		14.2
(-1.1) 		20.5
(1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		1.2
(-3)
A 		9.5
(0)
A 		1.1
(-3)
A 		17.7
(3)
A 		1.7
(-2.8)
A 		17
B 4
(-3)
A 		13.8
(2.7)
A 		12
(1.7)
A 		14.3
(3)
A 		11.1
(1.1)
A 		7.2
(-1.1)
A 		10
C 1.8
(-3)
A 		29.6
(3)
A 		1.8
(-3)
A 		1.7
(-3)
A 		6.5
(-2)
A 		17.6
(0.4)
A 		28
avr 2.8
(-3) 		14.9
(3) 		7.8
(-0.5) 		5.7
(-1.6) 		11.8
(1.5) 		8.8
(-0) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11086
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.6 NCBI
Target Description Y9C9A.6 /REP_DB=WormBase Gene ID /WP=CE25656 /TR=Q9N2T0 /GB=AAF60931.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068278 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-168) (str-168) mRNA, complete cds. 11/11 None
GENEFINDER00000021409 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4939446:4941384:1 11/11 None
Y9C9A.6 ENSEMBL cdna:known chromosome:CEL140:IV:4939257:4941225:1 gene:Y9C9A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4939262-4941231(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-168
Ensembl Y9C9A.6
Entrez Gene 189412 Entrez gene
SwissProt Q9N2T0 EMBL-EBI
WormBase CE38256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500679 Seven TM Receptor family member (str-168) [Caenorhabditis elegans] gb|AAF60931.2| Seven tm receptor protein 168 [Caenorhabditis elegans] 0.0
blast NP_500679 Seven TM Receptor family member (str-168) [Caenorhabditis elegans] gb|AAF60931.2| Seven tm receptor protein 168 [Caenorhabditis elegans] 1.0E-175
blast NP_500679 Seven TM Receptor family member (str-168) [Caenorhabditis elegans] gb|AAF60931.2| Seven tm receptor protein 168 [Caenorhabditis elegans] 1.0E-173
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 1.0E-138
blast CAE66375 Hypothetical protein CBG11635 [Caenorhabditis briggsae] 1.0E-137
blast NP_001023593 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAX22280.1| Seven tm receptor protein 169, isoform b [Caenorhabditis elegans] 1.0E-133
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 1.0E-133
blast CAE66375 Hypothetical protein CBG11635 [Caenorhabditis briggsae] 1.0E-130
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.6E-25
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.6E-25
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.7E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500679.2 7 10-30,43-65,88-110,130-152,201-223,251-273,283-305
Y9C9A.6 7 35-57,70-92,115-137,157-179,228-250,280-302,312-334
GENEFINDER00000021409 6 7-29,52-74,94-116,165-187,215-237,247-269
Sequence
Target Sequence 
>C. ELEGANS:181184_AT
ttcctagtcccactgatctctggaacaatttggattcttcaagattgggttttcctacat
ccaaatgcaaaaatgggcgaatatataaatgaaacagtatttattaattacggtgtcaac
gtcaccgatataacctattgtggtacatttttctatccgaaaaacgatcaaggagtgcca
agtctagattattttcaatttttcgggtttttggggttttgtgtgattatgggtaccaca
tttctaatcgttgtgatatttggtataaaaagctacaaactggtccgtgaacttccgaaa
catggagaatcagagtacacctacaaactgcaatcgcaacttttcaaggccttggtggta
caggctttcattccaataacattcctatttatcccaattggcctcgtcttcatagcacct
ctcctacattttgatatcgaaccggctagtttcttggtcactatatttttttcaatatat
ccagcagttgatccacttcctattttgctcattgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTAGTCCCACTGATCTCTGGAA 168 701 496 Antisense
TGGGTTTTCCTACATCCAAATGCAA 203 551 541 Antisense
GTCAACGTCACCGATATAACCTATT 677 463 610 Antisense
TGGGTACCACATTTCTAATCGTTGT 310 551 725 Antisense
ACTGGTCCGTGAACTTCCGAAACAT 577 95 774 Antisense
GTACACCTACAAACTGCAATCGCAA 608 459 810 Antisense
AATCGCAACTTTTCAAGGCCTTGGT 338 167 827 Antisense
GGTGGTACAGGCTTTCATTCCAATA 574 499 849 Antisense
CTATTTATCCCAATTGGCCTCGTCT 689 223 880 Antisense
CACCTCTCCTACATTTTGATATCGA 596 201 911 Antisense
TCCACTTCCTATTTTGCTCATTGTA 238 589 987 Antisense
Sequence Source Affymetrix Proprietary Database