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[181183_at]

Description Y9C9A.4 /REP_DB=WormBase Gene ID /WP=CE25654 /TR=Q9N2S8 /GB=AAF60929.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 28      6grp_cgc > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 19
(-1.8)
A 		39.3
(3)
A 		13.7
(-3)
A 		38.5
(2.8)
A 		26
B 29.1
(-0.2)
A 		58.7
(3)
A 		3.6
(-3)
A 		56.1
(2.7)
A 		55
C 96.2
(3)
A 		63.2
(0.5)
A 		15.9
(-3)
A 		78.7
(1.7)
A 		80
avr 48.1
(1.8) 		53.7
(2.5) 		11.1
(-3) 		57.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 30.3
(3)
A 		28.7
(2.7)
A 		25.9
(2.1)
A 		17.6
(0.3)
A 		1.7
(-3)
A 		1.9
(-3)
A 		29
B 55.8
(3)
A 		21.4
(-1)
A 		4.4
(-3)
A 		6.4
(-2.8)
A 		4.4
(-3)
A 		39.3
(1.1)
A 		51
C 32.3
(-0)
A 		64.1
(3)
A 		10
(-2.2)
A 		28.4
(-0.4)
A 		1.4
(-3)
A 		11.4
(-2)
A 		63
avr 39.5
(3) 		38.1
(2.8) 		13.4
(-1.2) 		17.5
(-0.6) 		2.5
(-3) 		17.5
(-0.6) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 6.9
(1)
A 		8.5
(3)
A 		3.6
(-3)
A 		5.6
(-0.6)
A 		5
B 9.3
(0.7)
A 		14.5
(3)
A 		0.8
(-3)
A 		11.9
(1.9)
A 		14
C 31.9
(3)
A 		18.2
(-0.1)
A 		5.5
(-3)
A 		13.3
(-1.2)
A 		26
avr 16
(3) 		13.7
(1.9) 		3.3
(-3) 		10.3
(0.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.6
(0.2)
A 		10.2
(3)
A 		5.6
(0.2)
A 		4.5
(-0.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		10
B 19.4
(3)
A 		7.1
(-1)
A 		1.1
(-3)
A 		1.7
(-2.8)
A 		1.8
(-2.8)
A 		14.7
(1.5)
A 		18
C 12
(0.6)
A 		19.6
(3)
A 		2.6
(-2.3)
A 		5.7
(-1.3)
A 		0.4
(-3)
A 		3.8
(-1.9)
A 		19
avr 12.3
(3) 		12.3
(3) 		3.1
(-1.8) 		4
(-1.4) 		0.9
(-3) 		6.3
(-0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10894
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.4 NCBI
Target Description Y9C9A.4 /REP_DB=WormBase Gene ID /WP=CE25654 /TR=Q9N2S8 /GB=AAF60929.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028421(11), NM_001028422(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028421 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-169) (str-169) mRNA, complete cds. 11/11 None
NM_001028422 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-169) (str-169) mRNA, complete cds. 10/11 None
SNAP00000021396 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4946095:4948508:1 11/11 None
GENEFINDER00000021415 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4942079:4948508:1 11/11 None
Y9C9A.4 ENSEMBL cdna:known chromosome:CEL140:IV:4946095:4948508:1 gene:Y9C9A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4946100-4948514(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y9C9A.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 0.0
blast NP_001023593 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAX22280.1| Seven tm receptor protein 169, isoform b [Caenorhabditis elegans] 0.0
blast NP_001023593 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAX22280.1| Seven tm receptor protein 169, isoform b [Caenorhabditis elegans] 1.0E-179
blast NP_001023592 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAF60929.1| Seven tm receptor protein 169, isoform a [Caenorhabditis elegans] 1.0E-176
blast NP_001023593 Seven TM Receptor family member (str-169) [Caenorhabditis elegans] gb|AAX22280.1| Seven tm receptor protein 169, isoform b [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.3E-20
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.7E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.7E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-11
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.2E-4
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023592.1 7 10-30,43-65,88-110,130-152,201-223,248-270,285-307
NP_001023593.1 7 10-30,43-65,88-110,130-152,201-223,248-270,285-307
Y9C9A.4 7 10-30,43-65,88-110,130-152,201-223,248-270,285-307
SNAP00000021396 6 12-30,43-65,101-123,172-194,219-241,256-278
GENEFINDER00000021415 14 7-25,35-57,69-91,140-162,187-209,224-246,258-274,294-316,329-351,375-397,425-447,496-518,543-565,580-602
Sequence
Target Sequence 
>C. ELEGANS:181183_AT
tagttccattggtttcagcgtccatttggatcactcaactttgggtatttcagcatccaa
actctgttacttcggcgtatttaagtgaaacagtgtttgtcaattatggtatgaatatat
ccgatatcacatacactggatccctgttctacccaccagatgaacacggagttccccatc
tggatttgatgcaacttttctcttatttgggattttgtgttactatgggcacaacatttt
ccacggtggtggtgtttggaatgaaaagctacaaattggtctgcgaactaccccagcttg
gagaatctgagtacacttacaaactacagtcacagcttttcagagcgttagtggttcagg
cattcatcccaataacattcctatttcttccaattggaatacttttcacagcacctcttc
ttcattttgatatcgaaccggctagtttcttggtcactatattctattcaatatatccag
ctgttgatccacttcctattatttttatagtcgtggattatagagatggattggttgaac
tcgtcggacatttcctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTCCATTGGTTTCAGCGTCCAT 518 643 419 Antisense
GCGTCCATTTGGATCACTCAACTTT 428 291 436 Antisense
ATCCAAACTCTGTTACTTCGGCGTA 21 41 473 Antisense
TCACATACACTGGATCCCTGTTCTA 39 629 545 Antisense
GGAGTTCCCCATCTGGATTTGATGC 608 515 586 Antisense
GGCACAACATTTTCCACGGTGGTGG 161 535 646 Antisense
CAAATTGGTCTGCGAACTACCCCAG 580 181 690 Antisense
GAACTACCCCAGCTTGGAGAATCTG 27 351 703 Antisense
CAAACTACAGTCACAGCTTTTCAGA 668 191 738 Antisense
CGTTAGTGGTTCAGGCATTCATCCC 378 247 764 Antisense
GTTGAACTCGTCGGACATTTCCTCT 542 437 952 Antisense
Sequence Source Affymetrix Proprietary Database